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Applied Filters
    List of models in which observed patterns are Important
    Supplemental material for ABM

    Keywords: textbookNetLogoagent-based modelingIndividual & Agent Based Modelingin-class activityproblem set

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    Breeding synchrony in colonial birds: from local stress to global harmony
    This is a supplemental resource for ABM

    Keywords: NetLogoagent-based modelingIndividual & Agent Based Modeling

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    NetLogo refresher course
    This is a supplemental resource from ABM

    Keywords: moduletextbookNetLogoagent-based modelingIndividual & Agent Based Modelingin-class activityproblem set

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    Marriage age model ODD
    Supplemental resource from ABM

    Keywords: case studytextbookNetLogoagent-based modelingIndividual & Agent Based ModelingODD protocol

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    Data from: Agent-based and Individual-based Modeling: A Practical Introduction, Chapter 5, Exercise 10 [Elevation]
    Supplemental data for ABM

    Keywords: elevationChapter 5exercise

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    Data from: Agent-based and Individual-based Modeling: A Practical Introduction, Chapter 5, Section 5.5 [Elevation]
    Elevation data input file for Section 5.5 (tab-separated plain text).

    Keywords: dataelevationChapter 5Section 5.5

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    2008-Huet-Deffuant-Differential Equation Models Derived from an Individual-Based Model Can Help to Understand Emergent Effects
    We study a model of primacy effect on individual's attitude. Typically, when receiving a strong negative feature first, the individual keeps a negative attitude whatever the number of moderate...

    Keywords: agent-based modelprimacy effectinformation filteringaggregated modelcollectiveinteractionsdouble-modelling

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    The ODD protocol: A review and first update
    The ‘ODD’ (Overview, Design concepts, and Details) protocol was published in 2006 to standardize the published descriptions of individual-based and agent-based models (ABMs).

    Keywords: agent-based modelabmstandardizationODD protocolModel descriptionModel formulationScientific communicationChapter 3model replic

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    Making Predictions with Linear Models: A Murder Mystery Case Study
    This Swirl lesson will introduce two main concepts to students: 1) the idea of uncertainty around linear slopes versus individual values and 2) predicting values using linear models.

    Keywords: data visualizationlinear modelscase study teachinguncertaintypredictionConfidence intervals

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    BIOME Avida ED Report video - YouTube
    Avida-ED is a digital evolution software program that allows students to ask questions and test hypotheses related to evolutionary concepts. Our working group explored how to incorporate Avida-ED...
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    Electrical Activity of Neurons
    This tutorial describes how neurons generate action potentials, and how scientists measure neuronal activity and record the firing of individual neurons.

    Keywords: Resources @ HHMI - BioInteractiveAnatomy & PhysiologyNervous systemCell communication

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    Spreadsheet Tutorial 2 - Autofill Data, Cell References, and Standard Deviation
    Generate a table with autofill, and use absolute cell reference to calculate variance and standard deviation.

    Keywords: Resources @ HHMI - BioInteractiveScientific ProcessStatistics and MathScientific MethodologyHigh School

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    DeFinetti 1.0
    This Excel workbook simulates evolution of a single gene with three alleles. The user assigns fitness values to each of the six possible genotypes, then enters starting allele frequencies for each...

    Keywords: population geneticsallelesevolutionary fitness

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    2015-Erzo-Luttmer-Four Models of Knowledge Diffusion and Growth
    This paper describes how long-run growth emerges in four closely related models that combine individual discovery with some form of social learning.

    Keywords: knowledge diffusionstationary distributionsproductivity distributionreaction-diffusion equationsquasi-stationary distributions

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    Assessment of CUREs BIOME Institute 2020 Report Out
    This is a video summary of the progress to date and individual plans for the Assessment of CUREs Working Group as part of 2020 BIOME Institute. ...

    Keywords: assessmentCUREsBIOME 2020

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    Communicating with Data: Digital Data Resources
    Students access, clean, configure, and standardize a dataset and create a relevant and scientifically valid data visualization to communicate science.

    Keywords: data in the classroomdata visualizationdigital resourcesbiodiversity informaticsbiodiversity collections

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    ODD Description of the BEFORE Beech Forest Model
    This is a supplemental resource from ABM

    Keywords: case studytextbookNetLogoagent-based modelingODD protocol

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    Salamander Mark-Recapture using SPARCnet plots with the Schnabel Method
    A salamander mark-recapture module where students field collect a third survey occasion to estimate population size

    Keywords: Field researchsalamanderCapture mark-recaptureAudience level - Advanced UG

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    2017-Fred_Adler-Mathematically Modeling Asthma
    Our Asthma models have examined how a viral infection can tip the immune system into a different state, with the potential to predispose an individual to future asthma

    Keywords: infectionasthmaimmune responserhinovirus

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    Pipeline in Paradise
    Student were introduce to Pipeline in Paradise case study, they we divided in groups based on domains and they provided a recommendation to landowners.

    Keywords: student's experience

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