You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Modeling Strep Throat Detection, Infection, and Spread Using an SIR Model and the Vensim Simulation Software
    The overarching goal of this lesson is to provide students with an opportunity to gain experience making and using biological models. Biological modeling can be used to investigate complex,...

    Keywords: infectious diseasebiological modelingSIR model

    1400

    views

    198

    downloads

    0

    comments

    0

    adaptations

    Cell Collective: Computational Modeling and Simulation Designed with the Classroom in Mind
    This working group collaborated on content and pedagogy surrounding the use of Cell Collective to integrate computational modeling and simulation into undergraduate biology curriculum.
    888

    views

    765

    downloads

    0

    comments

    0

    adaptations

    Fibroblast spheroids and other models of wound healing and infectivity
    The goal of our research is to create a functional in vitro 3D model of skin for the purpose of experimentation.

    Keywords: researchwound healing

    817

    views

    233

    downloads

    2

    comments

    0

    adaptations

    Luria-Delbruck
    These two workbooks model the evolution of phage resistance in a bacterial population under two alternative hypotheses.

    Keywords: ExcelphageResources @ ESTEEMLuria-Delbruckresistance

    1216

    views

    227

    downloads

    2

    comments

    0

    adaptations

    Professional development in quantitative biology and its relationship to promoting scholarly teaching
    Poster presented at Ecological Society of America Annual Conference 2017.

    Keywords: Faculty Mentoring Network

    1359

    views

    182

    downloads

    0

    comments

    0

    adaptations

    6-022-CannibalismPredatorPrey-ModelingScenario
    The Lotka-Volterra model tells us that the prey and predator exhibit a shifted cyclic behavior over time. In this module, we look at modifying this prey-predator model to consider the case when...

    Keywords: stabilitypredator-preyequilibriaoscillationscannibalismphase planesspiral sinks

    292

    views

    447

    downloads

    0

    comments

    0

    adaptations

    Tag You're It: A Lesson Investigating Study Design and Survival Analysis on an American Shad Tagging Study
    In this lesson, students will learn about the various mark-recapture and tagging methods that are used in various scientific disciplines and the information they can gather. Key elements of...

    Keywords: survival analysisAmerican ShadCox Proportional Hazards ModelStudy Design

    254

    views

    417

    downloads

    0

    comments

    0

    adaptations

    2018-Banerjee-EtAl-Prey-Predator Model with a Nonlocal Bistable Dynamics of Prey
    The primary goal of our present work is to consider nonlocal consumption of resources in a spatiotemporal prey-predator model with bistable reaction kinetics for prey growth in the absence of...

    Keywords: predator-preynonlocal consumptionTuring bifurcationspatial Hopf bifurcationspatio-temporal patternprey growth

    102

    views

    73

    downloads

    0

    comments

    0

    adaptations

    2014-Eckhoff-EtAl-Fun with maths-exploring implications of mathematical models for malaria eradication
    . In this note, four examples demonstrate both the effects of model structures and assumptions and also the benefits of using a diversity of model approaches fomalaria eradication strategies.

    Keywords: vaccinemalariamigrationeradicationseasonality

    170

    views

    61

    downloads

    0

    comments

    0

    adaptations

    2009-Reid-King-Pendulum Motion and Differential Equations
    This article presents a relatively simple, real-world example that instructors can use in the classroom to let students explore the effect of simplifying assumptions on a model’s ability to reflect...

    Keywords: pendulumphysical pendulum

    117

    views

    44

    downloads

    0

    comments

    0

    adaptations

    2006-G_Ashline-J_Ellis-Monaghan-How high-fast-long-Modeling water rocket flight with calculus
    We describe an easy and fun project using water rockets to demonstrate applications of single variable calculus concepts.

    Keywords: calculusFlightprojectilewater rocket

    120

    views

    47

    downloads

    0

    comments

    0

    adaptations

    2004-Hill-Lozowski-Sampson-Experiments on ice spikes and a simple growth model
    We observed ice-spike growth using time-lapse digital photography, using two water types in two different containers.

    Keywords: iceice spikebulk heat transfermass conservation

    83

    views

    29

    downloads

    0

    comments

    0

    adaptations

    2000-Idels-Wang-Harvesting Fisheries Management Strategies With Modified Effort Function
    This study concludes that a control parameter beta (the magnitude of the effect of the fish population size on the fishing effort function E), changes not only the rate at which the population goes...

    Keywords: sustainabilityfishFishingmanagementharvestfisherstrategyoverfishing

    124

    views

    40

    downloads

    0

    comments

    0

    adaptations

    2014-Chivers-EtAl-Predator-prey systems depend on a prey refuge
    We present an agent-based model which does not require the factors or constraints of previous models to reproduce all six patterns in persistent populations.

    Keywords: Individual & Agent Based Modelingpredator-preythink-pair-shareslynxrefugeprey switchingMustela-Clethrionomys systempatter oriented

    109

    views

    36

    downloads

    0

    comments

    0

    adaptations

    9-125-BeamModeling-ModelingScenario
    This modeling scenario examines the deflection of a cantilever beam under two different distributed loads. Students will have the opportunity to conduct experiments with their own cantilever beam...

    Keywords: Fluid MechanicsbeamcantileverimpulseLaplace transformboundary conditionfourth order

    172

    views

    214

    downloads

    0

    comments

    0

    adaptations

    1-030-EyeModel-ModelingScenario
    We offer a mathematical modeling experience using differential equations to model the volume of an intraocular gas bubble used by ophthalmologists to aid the healing of a surgically repaired region...

    Keywords: retinal surgeryAkaike Information CriterionSpanishsum of square errorssurgeryretionaophthalmologyeyeintraocular gas bubble

    1211

    views

    698

    downloads

    0

    comments

    0

    adaptations

    1-005-OilSlick-ModelingScenario
    We describe a modeling activity with difference and differential equations which enlightens students on the model building process and parameter estimation for a linear, first-order,...

    Keywords: model fittingspreadsheetsSpanishderrame de petróleodatosexpansiónoil slick

    1075

    views

    3532

    downloads

    0

    comments

    0

    adaptations

    3-019-ShuttleCockFalling-ModelingScenario
    We are given data on the time and position of a shuttlecock as it falls to the ground from a set height. We attempt to model the falling object and we confront the different resistance terms and...

    Keywords: resistancegravityFree Body Diagramshuttlecockfallingc object

    285

    views

    440

    downloads

    0

    comments

    0

    adaptations

    3-091-SpringModeling-ModelingScenario
    In this lab students will collect data on their spring mass systems and compare their empirical models to their theoretical ones—giving them an opportunity to actually test a model against data.

    Keywords: datalaboratoryLoggerProVerniermass-spring systemmodel validationempirical modeltheoretical model

    223

    views

    123

    downloads

    0

    comments

    0

    adaptations

    4-039-FallingDarts-ModelingScenario
    we develop, solve, and analyze a second order differential equation model for free fall incorporating air resistance. Students solve the model using two methods -- reduction of order and...

    Keywords: optimizationresistanceterminal velocitymuzzle velocitydrag coefficientfree fallair drag

    244

    views

    288

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search