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    Module M.7 Generalized linear mixed-effects models
    Introduction to Primate Data Exploration and Linear Modeling with R was created with the goal of providing training to undergraduate biology students on data management and statistical analysis...

    Keywords: R programming languageprimatespopulation ecology

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    2020-Cline_Fasteen_Francis_Sullivan_Wendt-Vision_for_Projects_Across_Mathematics_Curriculum
    We consider the use of projects in math courses as a mechanism for promoting coding, communication, and interdisciplinary application of math skills. Final projects play an important role, but we...

    Keywords: modelinginterdisciplinarywritingcodingprojecttechnical writing

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    Checking Normality in R with swirl
    How to use the "three-prong" approach to check for normality

    Keywords: biostatisticsR programming languageSwirl

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    Introduction to Version Control and Git Workshop
    Learn how to use version control with Git to work collaboratively and back up your work.

    Keywords: data analysisdatadata typesdata scienceearth sciencepythonremote sensinggithubversion controldata science educationcomputer programmingwildfireearth analyticsvgeographic information systems

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    REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19
    Video on normalizing microbiome data from the Research Experiences in Microbiomes Network

    Keywords: geneticsstatisticsdata analysisgraphingRStudioVideoexperimental designR programming languagemicrobiomesstudent researchinterdisciplinary educationlimnologyeco-informaticsresearch in the classroomtidyverseWorking with datasetsREMNet

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    Introducing Students to Data Science
    Presentation on data science at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: data science2019 QUBES/BioQUEST Summer Workshop

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    Introduction to Python for Data Science Course
    Free Introduction to Python for Data Science Course at DataCamp

    Keywords: data scienceonline learningcoursepythonfree

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    Introduction to R Course
    Free Introduction to R Course at DataCamp

    Keywords: Rdata scienceonline learningcoursefree

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    BIO 439/539: Big Data Analysis
    Course materials for BIO 439/539: Big Data Analysis

    Keywords: Rdata analysisbig datadata managementstatistical methods

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    Data Analysis for the Life Sciences
    An online stats book written completely in R

    Keywords: Rbiostatisticsstatistical analysisR Markdown

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    Answer Checking - Modified for Practice Applying UDL
    This shortened BIOMAAP activity on answer checking strategies was used as an example activity to practice applying Universal Design for Learning

    Keywords: math attitudeswebinarUniversal Design for Learninganswer checkingResources @ BIOMAAPUDL

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    3-011-EulerBallThrowing-ModelingScenario
    If a tennis ball is thrown through the air it will hit the ground due to gravity. Using Euler's method, write a short script (Python, Matlab, R, etc.) to find the trajectory of the ball which will...

    Keywords: codingdragonVectorsEuler's methodball

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    Ocean Acidification: Predator-Prey Interactions of Intertidal Snails and Sea Stars
    This lesson discusses ocean acidification, its causes, and the potential dangers that it may pose to aquatic ecosystems by analyzing the relationship between intertidal invertebrates. While...

    Keywords: predator-prey interactionsocean acidification

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    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    Keywords: data sciencebioinformaticsnext generation sequencingquality controlFASTQgenomicsprogrammingNIBLSElinuxmicrobiomeIllumina sequencingcommand lineFASTQEFASTPNGS analysisterminalMacemojiPhred scoreTrimmingshort read

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    Working with spreadsheet-style data in Python with pandas and seaborn
    This 4-hour participatory live-coding workshop takes learners through the basics of programming in Python via the Jupyter Lab interface and culminates with exploration and visualization of...

    Keywords: datapythonopenSpreadsheetbicylepandasseabornmatplotlib

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    Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course
    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    Keywords: microbiome

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    Eiffel Tower Photo and Website
    These are photos from my trip to Paris and a link to the official Eiffel Tower website. This is a test publication.

    Keywords: Audience level - Introductory UG - majors

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    Answer Checking
    This activity provides students with a set of strategies they can use to check their own answers in their biology and other courses. Students practice the answer checking strategies on a series of...

    Keywords: math attitudesanswer checkingResources @ BIOMAAP

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    The BioTAP Professional Development Model: Expanding Empirical Research on Graduate Student Teaching Professional Development
    The Biology Teaching Assistant Project (BioTAP) provides a year-long mentoring program for practitioners and researchers of Biology Graduate Teaching Assistant Teaching Professional Development...

    Keywords: mentoringstemcommunityUndergraduateteaching professional developmentGraduate Teaching AssistantConfidence in Research Skills

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    A Fun Introductory Command Line Lesson: Next Generation Sequencing Quality Analysis with Emoji!
    Radical innovations in DNA sequencing technology over the past decade have created an increased need for computational bioinformatics analyses in the 21st century STEM workforce. Recent...

    Keywords: bioinformaticsgenomicscodingJupyter notebookcommand lineCyVersescriptingnext generation sequencing analysis

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