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    2015-Heiko_Enderling-Integrating experimental data to calibrate quantitative cancer models
    For quantitative cancer models to be meaningful and interpretable the number of unknown parameters must be kept minimal. We focus on a tumor hierarchy of cancer stem and progenitor non-stem cancer...

    Keywords: cancertumorfittingagent-based

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    2014-Danielsen-Sørensen-Using authentic sources in teaching logistic growth
    This 12 page offering develops issues and questions about using historical materials to motivate mathematics study and develops 9 very rich exercises

    Keywords: real datalogistichistorical materials

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    2-001-NumericalMethodsComparisons-TechniqueNarrative
    This material teaches the basics of numerical methods for first order differential equations by following graphical and numerical approaches. We discuss the order of accuracy of the methods and...

    Keywords: Euler's methodimproved Euler's methodRK3 methodsRK4 methodsorder of accuracyabsolute errorCPU time

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    1-003-IntroNumericalMethods-TechniqueNarrative
    We develop elementary approaches to numerically solving first order differential equations with Euler's Method, Improved Euler's Method and develop these geometrically to compute numeric solutions...

    Keywords: analytic solutionEuler's methodimproved Euler's method

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    1-062-BacteriaGrowth-ModelingScenario
    We offer students a simulation experience or data from a simulation and ask them to model the simulation using several approaches: exponential growth fit, difference equation, differential...

    Keywords: bacteriaexponentialgrowth

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    3-010-EnergyInSpringMassSystem-ModlingScenario
    As a way to synthesize the effects of damping and forcing terms, this activity is meant to encourage students to explore how different forcing terms will change the total energy in a mass-spring...

    Keywords: energymass-spring systemkinetic energypotential energytotal energy

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    Genome Hunters: A Quantitative Biology Course-Based Undergraduate Research Experience (CURE)
    Poster outlining the process of designing, implementing, and assessing a new quantitative biology CURE course series. Presented at the 2021 BIOME Institute.

    Keywords: quantitative biologycourse-based undergraduate research experienceCURE2021 BIOME

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    Earth Analytics in Python Course
    Earth analytics is an intermediate, multidisciplinary course that addresses major questions in Earth science and teaches students to use the analytical tools necessary to undertake exploration of...

    Keywords: data analysisdatadata typesdata scienceearth sciencepythonpermafrostremote sensingfloodsGeographic Information System (GIS)data science educationcomputer programmingwildfireearth analytics

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    Get Started With GIS in Open Source Python Workshop
    There are a suite of powerful open source python libraries that can be used to work with spatial data. Learn how to use geopandas, rasterio and matplotlib to plot and manipulate spatial data in...

    Keywords: data analysisdatadata typesdata visualizationdata scienceearth sciencepythonremote sensingGeographic Information System (GIS)data science educationcomputer programmingwildfireearth anlaytics

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    Marriage Model (with errors)
    Marriage age model for use with NetLogo and ABM material

    Keywords: computational modelagent-based modelsocial networksmarriageChapter 6Chapter 6.5

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    Quantifying and Visualizing Campus Tree Phenology
    Large enrollment courses present a challenge for instructors who want to engage students in authentic science practices that fit the recommendations of Vision & Change. Our lesson provides a...

    Keywords: ecologyBiodiversityphenologyplant biology

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    Calling Bullshit DCS 105 Bates College RByte Worksheets
    These are handout worksheets for your in-class RByte activities.

    Keywords: RActivityGoogle CoLabCalling BullshitRByteData PracticeCoding SkillsSkill development

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    Case Study - Storks vs Babies
    This is a R project based on the Robert Matthews paper Storks vs Babies. The idea is to replicate the results of the paper, learn a bit about R for linear fits and graphing and explore correlation...

    Keywords: Recologycase studyRStudiopopulation ecologybirdsreplicationcorrelationfunnycalling bullpvaluecausationbiostatsalternative explanationconfounding variables

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    Visualization: Quantitative reasoning via image analysis, networks, topology, generative models, and 3D rendering
    Resource from the 2015 BioQUEST Summer Workshop
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    Using QIIME to Interpret Environmental Microbial Communities in an Upper Level Metagenomics Course
    Metagenomics is rapidly evolving due to advances in sequencing technologies and bioinformatics, but without proper training to interpret these datasets, student understanding remains limited. Aimed...

    Keywords: microbiome

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    NMDS to Study Dead Wood Fungi Communities in Parks of New Jersey
    Students use dead wood (saproxylic) fungi occurrence data from New Jersey, USA collected by students and faculty of Kean University to learn the basics of community ecology. Simple NMDS ordination...

    Keywords: RRStudioCommunity EcologyBioinformatics Educationbiodiversity informaticsNMDSfungiordination

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    1-131-CaffeineElimination-ModelingScenario
    We model the concentration of caffeine eliminated from the human body at a rate proportional to the concentration. This is a ``first-order reaction'' in the language of pharmacokinetics -- the...

    Keywords: caffeineeliminationpharmacokineticsdrug

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    1-130-AspirinAbsorption-ModelingScenario
    We model the amount of aspirin absorbed by the human body at a constant rate. This is a ``zero-order reaction'' in the language of pharmacokinetics -- the study of how drugs move in the body.

    Keywords: pharmacokineticsdrugaspirin

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    Got Milk? Biome 2021 Lightning Talk
    The Got Milk? working group plans to use lactase persistence evolution as a case study to teach genetics in large introductory biology courses. While developing these resources, we will be mindful...

    Keywords: geneticsintroductory biologyundergraduate researchundergraduate educationStudent misconceptionsbiasdiversitylactase persistenceraceBIOME 2021

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    Resource list for inclusive teaching in STEM (HHMI)
    A resource collection created for HHMI BioInteractive to guide the development of teaching resources aligned with principles of equity and inclusion.

    Keywords: education researchbibliographyreferencesdecolonizing

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