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    Scientist Spotlights and Data Nuggets Workshop Materials (BIOME 2021)
    Materials and resources for the "Scientist Spotlights and Data Nuggets Workshop," presented at the 2021 Biology and Mathematics Educators (BIOME) Institute.

    Keywords: data literacyDiversity in STEM classroomsonline professional development

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    Mol* Adaptation: Case of Severe Insulin Resistance
    This is an adaptation using Mol* on the original case written. This case focuses on understanding how a mutation in a cell signalling protein (a kinase) can prevent insulin function and lead to...

    Keywords: molecular visualization and analysisPDBMolecular Case Studyinsulin resistanceMol*MolStar

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    Students Authoring Molecular Case Studies
    Poster on using case studies to help students develop their skills in reading primary literature and identifying authentic scientific problems by authoring their own case studies. Presented at the...

    Keywords: case studiesProtein StructureProtein Data BankMolecular Case Study2021 BIOME

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    A Phenology-focused CURE using Herbarium Specimen Data
    10-week course-based undergraduate research experience in which students conduct novel research on the effects of climate on phenological events (e.g., flowering) of a plant species using publicly...

    Keywords: phenologyScientific ProcessCURE

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    Teaching Data Viz and Communication as an Undergraduate Biology Course: Assignments and Projects
    Teaching materials co-developed for a new upper-level undergraduate biology course to teach data exploration and communication without requiring previous coding experience.

    Keywords: data visualizationR programming languagedata literacycalling bulldata viztidy dataOur World in DataDear Data

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    Traditional Ecological Knowledge and Natural History
    In this module, students will explore Western Science and Traditional Ecological Knowledge and review a case study of how the TEK of the Inuit provided a way of knowing and understanding the...

    Keywords: Traditional ecological knowledgeUnderstanding ScienceBowhead Whale

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    Lichen Niches and Distributions Lab Activity
    This is a 2-part lab activity based on the EREN-NEON Flexible Learning Project: Lichens in Diverse Landscapes. Students conduct field surveys of lichen abundance near their homes and explore...

    Keywords: linear regressionGISNEONair qualityNational Ecological Observatory NetworkLichenfield based methodsEREN lichenairpollution

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    Ingestion of Microplastics by Coral
    QUBES lesson on ingestion of microplastics by coral. Lesson will give environmental background and then use R for hands-on statistical analyses, followed by critical thinking questions.

    Keywords: statisticsRenvironmentmicroplastic pollutioncoralwilcoxon

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    Exploring global reef health and human population using correlation and simple linear regression
    In this lesson, students will explore the relationship between reef cover and human disturbance. Students will manipulate a large dataset and perform normality tests, data transformations,...

    Keywords: population dynamicshumanlinear regressionconservationcorrelationRestorationcoral reefs

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    Remote Sensing of Plants and Topography in R (Project EDDIE)
    Students will explore different possible abiotic drivers of plant growth, defined as greenness and height. In the final step, students will analyze data from around the United States and consider...
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    “Leveling Up” In Your Favorite Video Game Math Modeling Activity
    Students write linear equations that represent their model for solving a problem about playing video games.

    Keywords: modelingNIMBioslinear equationsmiddle grades (4-9)Middle SchoolSystems of Equations

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    Regression: Tree Rings and Measuring Things
    Students develop scatter plots of growth rings by tree diameters and determine the equation of their best fit line.

    Keywords: NIMBiosregressiontree ringsline of best fit

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    Graphing bacterial growth rates: semi-log graphs v linear graphs
    In this activity, students will explore the concept of binary fission, generation time, and bacterial growth curves, with an emphasis on the log phase. Students will use semi-log graphs and linear...

    Keywords: graphingexponential growthMicrobiology Educationmicrobiologybacteriagrowth rateUndergraduate STEM educationCommunity College Educationqbccmanipulate equationsCellular and Molecular BiologyCreate graphsInterpret graphsbinary fissionsemi-log graphlinear graphgrowth curvecreating graphsExponential and Logarithmic Functions

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    Analysis of Amylase Activity
    This lab is an exploration of enzyme function and the effects of environmental conditions on the activity of the enzyme amylase. The lab utilizes analytical and graphing skills to assess enzyme...

    Keywords: data analysisintroductory biologyconcentrationgraphinglinear equationsBiochemistryscientific methodstandard curveenzyme functionMicrosoft ExcelInterpreting GraphsenzymesqbccCreate graphsInterpret graphsSolving Equations and Inequalitiesinterpret tablesAmylaseAlpha-amylaseEnzyme activityMaltoseDNS assayAbsorbancelab reportspectrophotometryregression linemanipulating equationsline of best fitgraphing by hand

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    Conservation and ethics of using synthetic genetics
    This contains teaching material - powerpoints and handouts that can be adapted for lectures and/or discussion groups.
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    GEA Introductory lesson on RNA-Seq
    This RNA-Seq lesson uses the CyVerse VICE Platform and Jupyter notebooks to examine the expression of the leptin gene in samples from a mouse experimental design evaluating diet (high-fat vs....

    Keywords: data sciencebioinformaticsGenome BrowserRNAseqhigh throughput sequencingmRNAAlignmentNCBI Sequence Read Archive

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    GEA Introductory lesson on BLAST
    The "Introduction to BLAST using Human Leptin" exercise aims to introduce students to the use of the Basic Local Alignment Search Tool (BLAST) to identify related sequences and compare similarity...

    Keywords: geneticsProbabilitydatabasebioinformaticsphylogenetic analysisgenomicsBLASTProtein sequenceSimilarity searches

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    SENCERizing your CURE
    Science Education for New Civic Engagements and Responsibilities (SENCER) is the signature initiative of the National Center for Science & Civic Engagement.

    Keywords: CURECUREscourse-based research experiences (CUREs)SENCER

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    Cleaning Biodiversity Data: A Botanical Example Using Excel or RStudio
    Access and clean an open source herbarium dataset using Excel or RStudio.

    Keywords: Exceldata in the classroomRStudiobiodiversity informaticsnatural history collectionsHerbariaData cleaning

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    Traditional Ecological Knowledge and Conservation
    Traditional Ecological Knowledge (TEK) is based on deep understanding of systems from observations made over hundreds to thousands of years. This resource connects TEK to modern conservation...

    Keywords: climate changeenvironmental justiceTraditional ecological knowledge

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