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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Creating Game-Based IDEAs using Twine (BIOME 2022)
    Games and gamification-principles are powerful tools that increase engagement and improve learning outcomes when applied appropriately to STEM instruction. The interactive nature of games allows...
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    BIOME 2021 QSSI Lightning talk
    Our team, Quantitative Skills and Science Identity (QSSI), met in the fall of 2021 to discuss and develop a methodology to assess the effectiveness of Data Nugget/Scientist Spotlight activities. We...

    Keywords: assessmentquantitative skillsData Nuggetscientist spotlightsBIOME 2021

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    Running the Same Pace During a Marathon
    This activity uses Algebra concepts for simple models using long distance running as an example.

    Keywords: NIMBiosAlgebraplottingSimple Equationsconverting unitsalgebra 1simple discrete equations

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    iBEARS Poster
    A description of the new NSF INCLUDES iBEARS network including background, project goals, project outcomes, connections to be made through QUBES, and future directions.
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    CyVerse: Scalable Image Informatics
    Poster on cyberinfrastructure for the machine learning ere presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: image analysisundergraduate researchmachine learningCyVerse

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    Ciliate Genomics Consortium: a professional learning community sharing modular curricula to support undergraduate research in the classroom
    The Ciliate Genomics Consortium (CGC) employs an integrative teaching and research model that combines both inquiry-driven class laboratory activities and collaborative consortium pedagogies to...
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    Integrating Natural History Collections into Undergraduate Education: Creating the Resources and Growing the Community
    Presentation given at SPNHC

    Keywords: idigbio

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    Teaching Advanced Concepts in Regulation of the Lac Operon With Modeling and Simulation
    Success in biochemistry and other life science courses requires that students understand important biological concepts. One of these concepts is how gene regulation ensures that homeostasis is...

    Keywords: gene regulationinducible operonProkaryotic cellPhosphoenolpyruvate transferase system (PTS)

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    2016-I-Liang_Chern-Mathematical Modeling_and_Ordinary_Differential_Equations
    We let the author's Table of Contents speak for itself.

    Keywords: differential equationsmodelingtextbook

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    Air Quality Data Mining: Mining the US EPA AirData website for student-led evaluation of air quality issues
    Air pollution directly affects human health endpoints including growth, respiratory processes, cardiovascular health, fertility, pregnancy outcomes, and cancer. Therefore, the distribution of air...

    Keywords: data miningenvironmental justiceair qualityairpollutionspatial reasoning

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    Genomics Education Alliance: A Collection of Posters for the 2020 BIOME Institute.
    This is a collection of posters from members of the Genomics Education Alliance (GEA) that will be presented at the 2020 BIOME Institute.

    Keywords: undergraduate researchgenomicsNIBLSEGEPgenomics educationGenomics Education AllianceGenomics Education PartnershipGEA

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    NEON Data in the Classroom: Using the QUBES Platform and Faculty Mentoring Networks to Build, Adapt, and Publish Data-Driven Open Educational Resources
    Poster on the NEON Faculty Mentoring Network presented at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: faculty mentoring networksNEON2019 QUBES/BioQUEST Summer Workshop

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    Converting a Face-to-Face Lab to Online: An Example of Process and Outcomes for a CRISPR-Based Molecular Biology Lab
    The COVID-19 pandemic created a need to convert in-person laboratory courses into an online format in a short amount of time. For this reason, we converted our face-to-face molecular biology lab...

    Keywords: mutationtranscriptioncrisprtranslation

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    Instructor Guide : Integrating Leadership Skills, Data Science, Artificial Intelligence, Simulation and Google Tools to learn Chemistry
    Scientific, leadership and recent artificial intelligence skills are integral frameworks of the curriculum. All of them together or individually can enhance knowledge, critical thinking and...

    Keywords: simulationactive learningstemBiochemistryInterdisciplinary STEMfaculty developmentchemistryArtificial IntelligencereflectionUndergraduate: Seniorleadership skillssinstructor traininggoogle tools

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    Conducting Biodiversity Science in the 21st Century (Poster)
    A poster summarizing how museum resources can be used for conducting biodiversity science in the 21st century including in research, education and in increasing inclusivity and diversity in STEM.

    Keywords: researchmuseumPosterBiodiversitynatural history museumsOpen Datadata literacydiversityinclusionBLUEdigitized natural history collectionsbiodiversity data

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    RESCUE-Net - Developing a Faculty Network in a Biodiversity Hotspot: the Research Experiences in Southern California For Undergraduate Ecologists Network (RCN-UBE Introduction)
    RESCUE-Net is a network of faculty in Southern California dedicated to mentoring undergraduates in conservation research so that they can become the next generation of ecological leaders.

    Keywords: RCN-UBE Introduction

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    2013-Herald-EtAl-Simple Climate Models to Illustrate How Bifurcations Can Alter Equilibria and Stability
    While college level science classes now frequently include exposure to climate change issues, not all science majors, math majors and future math K-12 teachers are likely to see climate issues in...

    Keywords: climate changeice capstipping pointbifuircation

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    BSL-4: Authorized Personnel Only
    National Center for Case Study Teaching in Science resource on the 2014 Ebola epidemic. This resource is also included in the NIBLSE Learning Resource Collection

    Keywords: infectious diseaseexperimental designbioinformaticsEbolaNIBLSECase It!PCRBLASTmultiple sequence alignmentPublished in National Center for Case Study Teaching in Sciencepolymerase chain reactionfebrile illnessvirusELISAenzyme linked immunosorbent assayfilovirusAfrica

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    Designing Strategies to Promote Diversity and Equity with a Campus Climate Survey
    Institutions of higher education are increasingly looking for strategies to assess diversity, equity, and inclusion (DEI). An alumni survey is a valuable tool for identifying actionable strategies...

    Keywords: EquitydiversityracismSexismcampus climate

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    3-092-WirelessPower-ModelingScenario
    We present an engineering application (wireless power transmission) modelled by a coupled system of two linear second-order differential equations with constant coefficients. One equation is...

    Keywords: DESMOSwireless power transmissionelectric circuitsKirchhoff's Voltage Law

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