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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Painting turtles: an introduction to species distribution modeling in R
    This module uses R software to introduce students to the process of accessing databases and building species distribution models based on occurrence records.

    Keywords: RResources @ ESA - TIEEfmnDIGspecies distributionshabitat suitabilitycooperative learningjigsaw

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    Plants in the Human-Altered Environment (PHAE): EREN-NEON Flexible Learning Project
    A project to compare effects of a continuum of landscape alteration intensities on plant diversity, biomass, and ecosystem services, and to explore human socioeconomic connections to plants in the...

    Keywords: erenNEONdiversitybiomass4DEE Frameworkecosystemsocioeconomic effects

    1582

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    408

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    Modules Ready or Adaptable for Online Learning: Google Sheet
    A dynamic database of modules discoverable on QUBES that are ready or adaptable for online learning. Anyone can use or contribute to this database.

    Keywords: modulesWorksheet

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    Teaching R with Swirl
    Session presentation on using Swirl, an interactive platform for learning and teaching R in the R console

    Keywords: Rdata analysisprogrammingSummer Workshop 2018Swirl

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    Investigating the footprint of climate change on phenology and ecological interactions in north-central North America
    Practice module included in Teaching Issues and Experiments in Ecology (TIEE) Volume 10

    Keywords: Resources @ ESA - TIEEclimate changephenologyspecies diversityproblem set

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    528

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    15

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    Making Change Sustainable: Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) Meeting Review
    The purpose of the meeting described in this review was to decide how best to ensure the sustainability of the Network for Integrating Bioinformatics into Life Science Education (NIBLSE; pronounced...

    Keywords: meetingsustainabilityfmnNIBLSEincubator

    1752

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    108

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    RIOS Working Group - Debunking the Myth that Race is Biological
    This RIOS Working Group grant funding compensated Raritan Valley Community College (RVCC) students for creating curricular materials that could be used to debunk the myth that race is biological....

    Keywords: geneticsbiology teachingraceOpen Pedagogyantiracismrios fundedRIOS Working Group

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    Quantifying The Drivers and Impacts of Natural Disturbance Events – The 2013 Colorado Floods
    This lesson focuses on ways that scientists identify and use data to understand ecological disturbance events using data from five public datasets. The main lesson focused on interpretation of...

    Keywords: ecologyundergraduate education

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    Air Quality Data Mining: Mining the US EPA AirData website for student-led evaluation of air quality issues
    Air pollution directly affects human health endpoints including growth, respiratory processes, cardiovascular health, fertility, pregnancy outcomes, and cancer. Therefore, the distribution of air...

    Keywords: data miningenvironmental justiceair qualityairpollutionspatial reasoning

    2017

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    456

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    Case Study: Genetic Variation and Speciation in the Black Tailed Rattlesnake complex (Crotalus molossus)
    It is important for biology students to understand how genetic variation is related to the formation of species in nature. This module is intended for students to obtain first hand experience with...

    Keywords: phylogeneticscase studySpeciationtree readingsystematicsTree thinkingPhylogeographydistance learninggenetic variation

    495

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    Exploring Species Interactions with "Snapshot Serengeti"
    Authentic learning experiences are a valuable way for students to gain an in-depth understanding of the scientific process. However, implementing such experiences in large enrollment courses can be...

    Keywords: ecologyspecies interactionscitizen scienceCommunity Ecologyanimal behaviorScience Communicationmigrationanimal activityspecies distribution

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    2015-Differential_Equations-CUPM_Curriculum_Guide_to_Majors_in_the_Mathematical _Sciences
    This is a report from the working group charged with making recommendations for the undergraduate curriculum in differential equations.

    Keywords: differential equationscurriculumCUPM

    203

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    US Forest Service land management efforts with Kurt Sable
    Kurt Sable has been a Hydrologist for the US Forest Service for 17 years, working for three different National Forests in Northern California. He supplies insight on the watershed restoration...

    Keywords: forest ecologyhydrologywildfirenatural resources

    416

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    Wolf Sheep Predation Simulation Exercise
    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.

    Keywords: simulationecologyIntroductoryNetLogoagent-based modelingagent-based modelLabbioinformaticspredator-preyUndergraduateNIBLSEInstructional SettingAudience LevelActivity LengthLess than 1 hoursimulation cycleC1. Role of bioinformaticsC6. ModelsReviewed at NIBLSEagent based modleing

    2676

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    Exploring HIV Evolution
    In this activity you will study aspects of sequence evolution by working with a set of HIV sequence data from 15 different subjects (Markham, et al., 1998). You will first learn about the dataset,...

    Keywords: EvolutionbioinformaticssequencingUndergraduateNIBLSEincubatorsHIVAudience LevelC1. Role of bioinformaticsC4. Bioinformatics toolsRecommended by NIBLSE

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    Teaching Data Viz and Communication as an Undergraduate Biology Course: Syllabus and Resources
    Teaching materials co-developed for a new upper-level undergraduate biology course to teach data exploration and communication without requiring previous coding experience.

    Keywords: data visualizationR programming languagedata literacycalling bulldata viztidy data

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    Microbiome Analysis with Oxford Nanopore 16S amplicon sequencing data
    The resource is a brief description of an analysis pipeline for microbiome analysis of Oxford Nanopore 16S amplicon sequence data. We tested the Kraken 2 and Krona pipeline from nanogalaxy with...

    Keywords: microbiome analysis toolNanopore

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    Gaining familiarity with R and Work with NEON OS & IS data – Plant phenology & temperature - adaptation
    This adaptation introduces students to R and the NEON OS & IS data – Plant Phenology & Temperature tutorial. A planned extension will prompt students to develop a testable hypothesis, based on...

    Keywords: data in the classroomtool:rstudiophenologydata managementNEONtemperature

    2644

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    Single Cell Insights Into Cancer Transcriptomes: A Five-Part Single-Cell RNAseq Case Study Lesson
    There is a growing need for integration of “Big Data” into undergraduate biology curricula. Transcriptomics is one venue to examine biology from an informatics perspective. RNA sequencing has...

    Keywords: bioinformaticscancertranscriptomicshigh-throughputData wranglingSingle cell RNA sequencingq

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    Pesticides in My Smoothie Bowl?
    Teaching resources, especially active learning pedagogy, are scarce for toxicology compared to what is available for other disciplines. Ecological and human health risk assessment are...

    Keywords: data analysistoxicologychemical toxicityecological risk assessmenthuman risk assessmentpesticide

    2921

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