You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Inquiry-based hypothesis testing using phylogenetic trees in MEGA
    A key learning objective in biology is applying bioinformatics tools to test a real-life question. These inquiry-based modules have students assemble and align data, and construct simple...

    Keywords: phylogeneticsbioinformaticsFASTANCBIBLASTmultiple sequence alignmentsequence similarityCourseSourceZika virusMEGAalcohol metabolism

    1141

    views

    711

    downloads

    0

    comments

    0

    adaptations

    2011-Nguyen-Shi-Modeling the absorption circulation and metabolism of tirapazamine
    This apparently is a student project and it develops the kinetic model, uses Matlab for numerical solution, analytic solution and numerical solution.

    Keywords: absorptionMichaelis-MentenMetabolismdrug metabolismcirculation

    152

    views

    50

    downloads

    0

    comments

    0

    adaptations

    1-026-Evaporation-ModelingScenario
    We provide data on evaporation of 91% isopropyl alcohol in six different Petri dishes and one conical funnel and on evaporation of water in one Petri dish. We ask students to develop a...

    Keywords: evaporationconealcoholPetri dish

    387

    views

    303

    downloads

    0

    comments

    0

    adaptations

    The River Breathes: Stream reach metabolism as an integrative and comparable measure of stream processes
    Stream reach metabolism integrates organism respiration & production to provide a valuable ecosystem measure that varies as a function of biotic & abiotic factors. As a powerful indicator of whole...

    Keywords: ecosystem respirationMetabolismriverRespirationproductionRiver Field Studies NetworkDissolved OxygenStream MetabolismEcosystem ProductionStreamField LessonGuided Student ReflectionStudent Reflection

    722

    views

    1827

    downloads

    0

    comments

    0

    adaptations

    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
    Introductory bioinformatics exercises often walk students through the use of computational tools, but often provide little understanding of what a computational tool does "under the...

    Keywords: BLASTmultiple sequence alignmentsequence similarityphylogramZika virusAlgorithmScoring Matrix

    2170

    views

    668

    downloads

    1

    comments

    0

    adaptations

    1984-Marguerite_Hays-Compartmental Models for Human Iodine Metabolism
    Compartmental models for the various aspects of human iodine metabolism are reviewed, emphasizing the role of Mones Berman in the development of this field.

    Keywords: compartment modeliodinethyroid

    158

    views

    63

    downloads

    0

    comments

    0

    adaptations

    2013-Alicia_Caldwell-Students Rise to the Challenge of Modeling Yeast Growth Despite Sour Hiccups from Imperfect Data
    This paper describes a lab in which students in an Applied Mathematics in Biology course observe the growth of Saccharomyces cerevisiae, a yeast strain, in differing sugar concentrations for use in...

    Keywords: Saccharomyces cerevisiaelogisticyeastdeathgrowthsugaralcohol

    193

    views

    45

    downloads

    0

    comments

    0

    adaptations

    Metabolism for Energy and the Respiratory Quotient
    This module introduces the respiratory quotient in the context of understanding how metabolism is affected by environmental conditions. It is intended for an introductory biology audience.
    659

    views

    351

    downloads

    0

    comments

    0

    adaptations

    1957-Axelrod_ Brady_Witkop_Evarts-The Distribution and Metabolism of Lysergic Acid Diethylamide
    The development of a specific and sensitive method for the estimation of LSD in biological materials has enabled us to study the tissue distribution, excretion, rate of biotransformation, and...

    Keywords: mathematical modeldataLSDMetabolismbloodstreamlysergic acid diethylamidedistribution

    203

    views

    95

    downloads

    0

    comments

    0

    adaptations

    2010-Shianga-EtAl-Computational model of the human glucose-insulin regulatory system
    A computational model of insulin secretion and glucose metabolism for assisting the diagnosis of diabetes mellitus in clinical research is introduced. The

    Keywords: glucose tolerance testsum of squared residualsmultiple shooting methodcost function

    131

    views

    49

    downloads

    0

    comments

    0

    adaptations

    2007-Exben_Friis-Jensen-Modeling and Simulation of Glucose-Insulin Metabolism
    In this thesis one of the models of diabetes, Bergman’s minimal model is described trough derivation and simulations.

    Keywords: Metabolisminsulin resistanceglucosePID controllerintolerance

    122

    views

    52

    downloads

    0

    comments

    0

    adaptations

    2019-Lorelei_Koss-SIR_Models_Differential_Equations_that_Support_The_Common_Good
    This article surveys how SIR models have been extended beyond investigations of biologically infectious diseases to other topics that contribute to social inequality and environmental concerns.

    Keywords: environmentSIRsocial justiceepidemiccommon good

    173

    views

    50

    downloads

    0

    comments

    0

    adaptations

    1971-Carl_Metzler-Usefulness Of Two Compartment Open Model In Pharmacokinetics
    Compartment models are widely used in pharmaceutical research to quantitate the kinetics of absorption, distribution, metabolism and excretion of a drug. In this article two applications of the two...

    Keywords: LSDcompartmentpharmacokinetics

    210

    views

    89

    downloads

    0

    comments

    0

    adaptations

    2003-Richard-Carson-Tracer kinetic modeling in PET
    The use of radiopharmaceuticals and the imaging of their biodistribution and kinetics with modern instrumentation are key components to successful developments in PET.

    Keywords: Metabolismtomographyradiopharmaceuticalspositron emission

    171

    views

    68

    downloads

    0

    comments

    0

    adaptations

    Regulation of Malate Dehydrogenase by Fumarate
    A "snippet" paper

    Keywords: JoCURE

    273

    views

    112

    downloads

    0

    comments

    0

    adaptations

    Oxygen Diffusion in Simple Organisms
    This module introduces equations related to oxygen diffusion in the context of understanding the relationship between oxygen needs and metabolism. It is intended for an introductory biology audience.

    Keywords: linear equationsOpenStaxAnimal Physiologyparabolic equations

    922

    views

    189

    downloads

    0

    comments

    0

    adaptations

    Sperm Motility
    This module introduces equations related to oxygen diffusion in the context of understanding the relationship between oxygen needs and metabolism. It is intended for an introductory biology audience.

    Keywords: OpenStaxAnimal Physiologyparabolic equationssquare root

    901

    views

    208

    downloads

    0

    comments

    0

    adaptations

    Regulation of Gene Expression and Adipogenesis by PPAR-γ
    Students learn about transcriptional regulation of PPAR-γ, an important controller of adipose tissue stores and energy metabolism through a drawing/coloring activity of the different components...

    Keywords: gene expressionsmall group worktranscriptional regulationadipose tissuefat metabolismrepressor

    1856

    views

    1114

    downloads

    0

    comments

    1

    adaptations

    Bringing Pasteur Back to Life: Studying the Biochemistry of Yeast Fermentation Through Discussion Groups and an At-Home Lab
    This hands-on, student-centered biochemistry lesson introduces beginner biochemistry students to the techniques of effectively reading and discussing primary literature, identifying fundamental...

    Keywords: primary literatureexperimentationyeastMetabolismFermentationRespirationequilibrium

    3714

    views

    272

    downloads

    0

    comments

    0

    adaptations

    2012-Augustus-Wali-Mathematical Modeling of Uganda Population Growth
    The purpose of this paper focuses on the application of logistic equation to model the population growth of Uganda using data from 1980 to 2010 (inclusive).

    Keywords: population growthlogistic growthDrug and Alcohol detoxificationcarrying capacityvital coefficients

    216

    views

    61

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search