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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    LEAGSEA
    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    Keywords: videosbioinformaticsgenomicsyoutubeLEAGSEAgene set enrichmentLeading Edge Analysis

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    Using Phyre2
    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    Keywords: videosbioinformaticsproteinsgenomicsyoutubephyre23DLigandSite

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    Simple Heat Maps with Morpheus
    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    Keywords: Excelbioinformaticsgenomicsyoutubemorpheusheat maps

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    How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office
    YouTube video on using statistical notation in Microsoft Word.

    Keywords: videosonline learninggenomicsyoutubestatistics symbols

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    Navigating Bacterial Changes in Aging Organisms: Graphs, Patterns, and Models
    Aging is an incredibly important area of research, and recent biological advances implicate the intestines in aging pathologies. Given that the gut harbors an immense amount of an organism’s...

    Keywords: statisticsgraphingmathematics for life sciencesmathexponential growthPrecalculus

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    Learn Biological Sciences and Physics through scientific process, creation, experimentation and analysis
    Microbes remain attached and grow on various surfaces whether living or non-living. These surfaces provide differential growth substances for microbes to remain attached or grow. The differential...

    Keywords: data analysisscientific methodphysicshands-onScientific InquirymicrobesBiological SciencesSpectrophotometer

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    Learn Biological Sciences and Chemistry through cellular transport and concentration ( online and hands-on)
    Osmosis is a process by which by which solvent move from a region of lower solute concentration to region of higher solute concentration through a semi-permeable membrane. Cells utilize the process...

    Keywords: statisticsdata analysisbiologycell biologyconcentrationskillscellchemistryOsmosisSpectrophotometersolutionsolutesolvent

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    2015-The European Bioinformatics Institute-BioModels Database
    BioModels Database is a repository of computational models of biological processes. Models described from literature are manually curated and enriched with cross-references.

    Keywords: computational biologyBioModels Databasebio databaselife science experiments

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    CURESUB Lecture 5 - OMICS
    s assistant professor in the department of medicine at Rutgers Robert Wood Johnson Medical School, Manisha Bajpai, PhD., led the Gastroenterology division’s clinical and translational research...
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    Cell Collective: Learning biology with modeling and simulations
    Cell Collective is an online, research-grade modeling platform adapted to engage students in creating and simulating dynamic models of biological processes.

    Keywords: modelingsimulationSimulationsCell Collective

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    Integration of Bioinformatics into Life Science Curricula: Community Development, Dissemination, and Assessment of a NIBLSE Learning Resource
    Big data and computational tools have transformed the way we address biological questions. To prepare undergraduates for tomorrow’s challenges, life science curricula should integrate the...

    Keywords: bioinformaticsNIBLSELife Science

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    Investigating human impacts on stream ecology: Scaling up from Local to National with a focus on the Southeast
    Adaptation of the "TIEE Module- How does nutrient pollution impact stream ecosystems locally and nationally?" specifically to include information on the SE (particularly Atlanta, GA).
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    Learning with All Your Senses: Mathematical Manipulatives Enhance Student Comprehension of Biological Models
    Handout for a session presentation on kinesthetic learning at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: Models3D models3D printingmanipulativeskinesthetic learning

    1134

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    Adaptation of Investigating human impacts on stream ecology: locally and nationally
    TIEE Module- How does nutrient pollution impact stream ecosystems locally and nationally?
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    Regulation of Sex Determination
    This activity accompanies the HHMI BioInteractive module Sex Verification of Athletes (​https://www.hhmi.org/biointeractive/testing-athletes​). It provides students with exercises to explore the...
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    Bioinformatics: An Interactive Introduction to NCBI
    Modules showing how the NCBI database classifies and organizes information on DNA sequences, evolutionary relationships, and scientific publications. And a module working to identify a nucleotide...

    Keywords: NCBINIBLSEDNABLASTnucleotide sequencing

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    Regulation Across Scales: Data Points on How Life Works
    We examined the scientific literature for simple, data-based illustrations of double-negative logic in the regulation of biological systems as described by Sean B. Carroll in his text, The...
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    Wolf Sheep Predation Simulation Exercise
    This resource is an exercise to introduce students to agent-based modeling of biological systems through working with a simple existing model.

    Keywords: simulationecologyIntroductoryNetLogoagent-based modelingagent-based modelLabbioinformaticspredator-preyUndergraduateNIBLSEInstructional SettingAudience LevelActivity LengthLess than 1 hoursimulation cycleC1. Role of bioinformaticsC6. ModelsReviewed at NIBLSEagent based modleing

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    Electron Location, Location, Location: Understanding Biological Interactions
    Introductory Biology courses typically introduce the structure and function of biomolecules such as proteins and nucleic acids. To understand biomolecules fully, students require knowledge of...

    Keywords: hydrogen bondshydrophobicity/hydrophilicitypolar and non-polar covalent bonds

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    Generating Biological Hypotheses in a "Course-based Undergraduate Research Experience"(CURE) Course
    Hypotheses are often incorrectly defined as educated guesses or if/then statements. Further confusion arises from the fact that not all disciplines define hypotheses similarly. The difficulty in...

    Keywords: scientific methodHPT axisNeural stem cells

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