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    Type I Functional Response
    This module introduces the type I functional response in the context of understanding the relationship between an individual's rate of consumption and food density. It is intended for an...

    Keywords: ecologylinear equationsfood density

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    Exploring the functionality of R
    Students work with example data to generate a length-weight plot and use lm() to obtain regression coefficients. Base plot functions are used to plot both the data and the regression line.
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    Fitzhugh-Nagumo Model
    The FitzHugh–Nagumo model describes a prototype of an excitable system (e.g., a neuron).

    Keywords: differential equationsmathematical modeldifferential equation modelordinary differential equation modelneuroscienceexcitable

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    Marriage Model (with errors)
    Marriage age model for use with NetLogo and ABM material

    Keywords: computational modelagent-based modelsocial networksmarriageChapter 6Chapter 6.5

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    Dendroclimatology
    Dendroclimatologists can reconstruct climate records further into the past than written records, by examining tree rings. Students "reverse-engineer" this process by considering growth rates of a...

    Keywords: linear regressiongraphingdata visualizationstandardizationclimatetree ringsdendrochronology

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    Cookbook for R
    The goal of the cookbook is to provide solutions to common tasks and problems in analyzing data.

    Keywords: Rdata analysisdata manipulationdata

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    SUMS4Bio - Video tutorials in math and stats for biology students
    Links to videos and pdf tutorials for core mathematical and statistical concepts used in biology

    Keywords: Probabilitystatisticsmathematicsvideoschi-squaredExcelBar Graphsline graphsScatter Plotsp-valuest-testsExponentsLogarithmsproportionsRatiosbinomialdata typessummary statisticsfrequency histogramsResources @ SUMS4BioPresentation

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    Critical Zone Science
    My class used Water Balance of a Tree (Unit 5.1) to begin quantifying the fundamental pathways for water movement within a forest. The ultimate goal was to model transpiration of the redwood forest...
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    Bioimage Informatics Activity
    Students use basic bioimage informatics techniques to acquire quantitative data from images of cultured cells and test a hypothesis about the effect of a genetic mutation on cellular phenotypes

    Keywords: geneticsResources @ HHMI - BioInteractivegenomicscancergenetic basis of diseasebiology of cells

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    Ripped from the Headlines! Creating Case Studies from Primary Literature.
    Poster on using case studies developed from primary literature presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: case studyprimary literatureSummer Workshop 2018

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    Biogeography of plant-associated fungi: who lives where and why?
    This dataset of fungal communities associated with the leaves an endemic Hawaiian tree provides students opportunities to explore relationships between environmental variables and microbial...

    Keywords: small group activityinquiry-based learningbiogeographymicrobial ecology

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    Using DNA Subway to Analyze Sequence Relationships
    This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

    Keywords: phylogeneticsNIBLSEDNA BarcodingDNA sequenceBLASTmultiple sequence alignmentC1. Role of bioinformaticsC2. Computational conceptsC4. Bioinformatics toolsC5. Data retrievalC8. Data typesIncubated at NIBLSE

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    Intro to DNA Barcoding
    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 30-45 min lecture or lab class period.

    Keywords: phylogeneticsNIBLSEDNA BarcodingDNA sequenceBLASTmultiple sequence alignment

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    Intro to DNA Subway Blue Line
    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 1 hr 50 min lecture or lab class period.

    Keywords: phylogeneticsNIBLSEDNA BarcodingDNA sequenceBLASTmultiple sequence alignment

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    Demography from physical cemeteries, "virtual cemeteries," and census data
    Laboratory experiment included in Teaching Issues and Experiments in Ecology (TIEE) Volume 8. Learning objective: Students will learn how to create life tables and survivorship curves using data...

    Keywords: Resources @ ESA - TIEEdemographysurvivorshippopulation ecologylife tableslab activity

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    Visualizing Global CO2 Emissions
    Using CO2 emissions data, students will learn how to visualize data with Tableau Public. The teaching materials are suitable for upper-level undergraduate courses on data analysis and research...

    Keywords: data visualizationResource Typeclimate change dataTableau

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    Demography from physical cemeteries, "virtual cemeteries," and census data
    Laboratory experiment included in Teaching Issues and Experiments in Ecology (TIEE) Volume 8

    Keywords: Resources @ ESA - TIEEdemographysurvivorshiplife tables

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    Modification to What do Trees Know about the Rain
    Use of the tree ring data vs. precipitation to discuss how trees respond to drought

    Keywords: discussionslecture slidesgraphsgroup-ldcfmn

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    DNA Subway Learning Resources
    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    Keywords: phylogeneticsIntroductoryLabbioinformaticsUndergraduateNIBLSEDNA BarcodingDNA sequenceBLASTmultiple sequence alignmentDNA SubwayInstructional SettingAudience LevelAdvancedActivity LengthExtended ProjectC1. Role of bioinformaticsC2. Computational conceptsC4. Bioinformatics toolsC5. Data retrievalC8. Data types

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    Bioinformatics: CpG Islands
    This is an introductory bioinformatics exercise intended for use in a genetics course.

    Keywords: geneticsepigeneticsbioinformaticsNIBLSEcpggenome database

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