You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Materials for Teaching the SIR Epidemic Model
    This web page contains materials created by faculty of the University of Nebraska-Lincoln Department of Mathematics to teach basic fundamentals of mathematical epidemiology.
    940

    views

    1158

    downloads

    0

    comments

    0

    adaptations

    Stream Discharge Module- Beck Modification (Project EDDIE)
    In this module, students use data from the United States Geologic Survey to assess changes in stream discharge with time, calculate flood frequency, and see the effects of urbanization and flood...

    Keywords: floodsProject EDDIEurbanizationstreams

    1336

    views

    590

    downloads

    0

    comments

    0

    adaptations

    Testing hypotheses about the role of wildfire in structuring avian communities
    This module assesses the role of wildfire in the eastern US and its impact on bird communities using NEON bird survey data from pre- and post- a major wildfire in the Great Smoky Mountains National...

    Keywords: data manipulationspecies richnessANOVAspecies diversitybirdswildfireBACI design

    29904

    views

    1982

    downloads

    0

    comments

    0

    adaptations

    Stream Discharge Module (Project EDDIE)
    Stream discharge is a fundamental measure of water supply in stream systems. Low discharge may cause problems with water supply and fish passage, while high discharge may mean flooding. In this...

    Keywords: floodsProject EDDIEurbanizationstreams

    1244

    views

    339

    downloads

    0

    comments

    1

    adaptations

    Introduction to Version Control and Git Workshop
    Learn how to use version control with Git to work collaboratively and back up your work.

    Keywords: data analysisdatadata typesdata scienceearth sciencepythonremote sensinggithubversion controldata science educationcomputer programmingwildfireearth analyticsvgeographic information systems

    1363

    views

    333

    downloads

    0

    comments

    0

    adaptations

    Modeling the lac Operon to Understand the Regulation of Gene Expression in Prokaryotes
    This resource is a recitation activity designed for an introductory biology course in which students explore a lac operon simulation (https://qubeshub.org/resources/phetlacoperon).

    Keywords: simulationLac Operon

    1417

    views

    663

    downloads

    0

    comments

    0

    adaptations

    REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19
    Video on normalizing microbiome data from the Research Experiences in Microbiomes Network

    Keywords: geneticsstatisticsdata analysisgraphingRStudioVideoexperimental designR programming languagemicrobiomesstudent researchinterdisciplinary educationlimnologyeco-informaticsresearch in the classroomtidyverseWorking with datasetsREMNet

    1319

    views

    438

    downloads

    0

    comments

    0

    adaptations

    A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    Keywords: data sciencebioinformaticsnext generation sequencingquality controlFASTQgenomicsprogrammingNIBLSElinuxmicrobiomeIllumina sequencingcommand lineFASTQEFASTPNGS analysisterminalMacemojiPhred scoreTrimmingshort read

    2602

    views

    2303

    downloads

    1

    comments

    0

    adaptations

    The nose knows: How tri-trophic interactions and natural history shape bird foraging behavior. Introduction to data visualization.
    Students investigate the role of olfaction and infochemicals on bird foraging behavior.. In this module students learn to analyze and present graphic data in ways that simplify interpretation.

    Keywords: Resources @ ESA - TIEEforagingdata visualizationCommunity Ecologyfmnbehavioral ecologyDIGtrophic cascadesAntarctic foodd webs

    1315

    views

    514

    downloads

    0

    comments

    0

    adaptations

    Working with Datasets in R swirl
    The goal of this lesson is to learn how to import datasets into R, understand variable types, make adjustments to variables, perform basic calculations, and begin data visualization. The exercise...

    Keywords: graphingRStudioclimate change datatidyverseWorking with datasets

    1589

    views

    898

    downloads

    0

    comments

    0

    adaptations

    Regulation of Gene Expression and Adipogenesis by PPAR-γ
    Students learn about transcriptional regulation of PPAR-γ, an important controller of adipose tissue stores and energy metabolism through a drawing/coloring activity of the different components...

    Keywords: gene expressionsmall group worktranscriptional regulationadipose tissuefat metabolismrepressor

    1713

    views

    993

    downloads

    0

    comments

    1

    adaptations

    The nose knows: How tri-trophic interactions and natural history shape bird foraging behavior. An introduction to statistical analysis in animal behavior research
    Students investigate the role of olfaction and infochemicals on bird foraging behavior through two different quantitative activities where they generate hypotheses, create figures, conduct data...

    Keywords: Resources @ ESA - TIEEforagingfmnanimal behaviorbehavioral ecologyDIGtrophic cascades

    1536

    views

    2089

    downloads

    0

    comments

    0

    adaptations

    Data Management Adaptation: Correlating Forest Community Dynamics to Climate
    Students use vegetation structure data from the National Ecological Observatory Network to understand necessary steps of data management from data collection to data analysis by correlating...

    Keywords: forest ecologydata managementspreadsheetsCommunity DynamicsNEONDIGNational Ecological Observatory Networkbiomass

    2126

    views

    1213

    downloads

    0

    comments

    0

    adaptations

    Leaf litter and soil invertebrates
    The diversity of invertebrates occupying the leaf litter and organic layer of soil can be quantified to examine abiotic and biotic questions. This lab can be used as a starting point for a...
    1610

    views

    1408

    downloads

    0

    comments

    0

    adaptations

    Introduction to Genome Browser: What is a Gene?
    In this module, we will use a web-based visualization tool called a Genome Browser to explore the structure of a eukaryotic gene, and obtain a basic understanding of how this information is...
    693

    views

    156

    downloads

    0

    comments

    0

    adaptations

    Bioimage Informatics Activity
    Students use basic bioimage informatics techniques to acquire quantitative data from images of cultured cells and test a hypothesis about the effect of a genetic mutation on cellular phenotypes

    Keywords: geneticsResources @ HHMI - BioInteractivegenomicscancergenetic basis of diseasebiology of cells

    1359

    views

    1115

    downloads

    0

    comments

    0

    adaptations

    The effects of Avian Malaria On Pigeon Fledging Growth
    Poster on a case that combined Biology and Statistics in a student research project presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

    1158

    views

    295

    downloads

    0

    comments

    0

    adaptations

    More In Depth Spreadsheet Management Adaptation of Data Management using NEON Small Mammal Data
    This adaptation consists of three exercises that introduce students to 1) format spreadsheet data tables, 2) carry out spreadsheet quality control, and 3) count/sort/filter data of interest in...

    Keywords: data managementspreadsheetsmammalsCapture mark-recapture

    2964

    views

    1420

    downloads

    0

    comments

    0

    adaptations

    Biometeorology of Asthma in South Florida: From Statistical Analysis to Mathematical Modeling
    Part of the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: data analysisdynamical systemsmathematical modelingsynchronizationasthmaimmune systemcomplex systemsfeedback loopsself-organized criticalitychaos

    1530

    views

    182

    downloads

    0

    comments

    0

    adaptations

    Analyzing interesting images motivates mathematics and statistics learning
    Presentation by Jeremy Wojdak made as part of the "Bringing Research Data to the Ecology Classroom: Opportunities, Barriers, and Next Steps” Session at the Ecological Society of America annual...

    Keywords: Ecological Society of America

    1695

    views

    341

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search