You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Introduction to Genome Browser: What is a Gene?
    In this module, we will use a web-based visualization tool called a Genome Browser to explore the structure of a eukaryotic gene, and obtain a basic understanding of how this information is...
    740

    views

    188

    downloads

    0

    comments

    0

    adaptations

    EvolSeq
    An Excel worksheet that simulates the molecular evolution of DNA sequences.

    Keywords: molecular evolutionDNA

    1295

    views

    277

    downloads

    0

    comments

    0

    adaptations

    Have fish assemblages recovered from the legacy of acid rain?
    This module provides a framework for upper-level ecology students to learn about limiting factors for stream fish diversity, using data from Shenandoah National Park and gaining skills in...

    Keywords: Problem based learningdiversitycooperative learninglimiting factorsaquatic ecosystemspyramid examlab reports

    1806

    views

    1169

    downloads

    0

    comments

    0

    adaptations

    Using DNA Subway to Analyze Sequence Relationships
    This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

    Keywords: phylogeneticsNIBLSEDNA BarcodingDNA sequenceBLASTmultiple sequence alignmentC1. Role of bioinformaticsC2. Computational conceptsC4. Bioinformatics toolsC5. Data retrievalC8. Data typesIncubated at NIBLSE

    3027

    views

    574

    downloads

    0

    comments

    2

    adaptations

    Intro to DNA Barcoding
    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 30-45 min lecture or lab class period.

    Keywords: phylogeneticsNIBLSEDNA BarcodingDNA sequenceBLASTmultiple sequence alignment

    1840

    views

    220

    downloads

    0

    comments

    0

    adaptations

    Intro to DNA Subway Blue Line
    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 1 hr 50 min lecture or lab class period.

    Keywords: phylogeneticsNIBLSEDNA BarcodingDNA sequenceBLASTmultiple sequence alignment

    3036

    views

    218

    downloads

    0

    comments

    0

    adaptations

    Modifying HHMI Anole Resources: Using Image J to Quantify Ecomorphs and Tree-thinking to Explore Evolutionary Hypotheses
    I recombined the HHMI resources to have the students perform the image analysis from Virtual Lab 1 in Image J and explore the evolutionary principles in the Lizard Phenology modules

    Keywords: Evolutionorganismal biologytool:imagejSpeciationTree thinkingDNAphylogeny and classification

    2044

    views

    2922

    downloads

    0

    comments

    0

    adaptations

    Calculating Lifetime Cancer Risk Resulting from DNA Replication
    An expanded case study adapted from an HHMI Data Point on Cell Division and Cancer Risk using Figure 1 from Tomasetti, C. and Vogelstein, B. (2015).

    Keywords: cancerScientific ProcessStatistics and MathScientific Methodologybiology of cellscell growth and divisionHigh School

    1473

    views

    1075

    downloads

    0

    comments

    0

    adaptations

    Undergraduate Research Experiences in Computational Science at a Community College
    Resource from the 2015 BioQUEST Summer Workshop

    Keywords: computer simulationscomputational modelInterdisciplinary STEMcomputational toolscommunity colleges

    1423

    views

    703

    downloads

    0

    comments

    0

    adaptations

    Open science, open data, open source projects for undergraduate research experiences
    Resource from the 2015 BioQUEST Summer Workshop
    1291

    views

    176

    downloads

    0

    comments

    0

    adaptations

    Cancer Discovery Activities
    These two hands-on activities are based on a Howard Hughes Medical Institute 2013 Holiday Lectures on Science video (http://www.hhmi.org/biointeractive/cancer-genetic-disease-video-highlights)...

    Keywords: geneticsResources @ HHMI - BioInteractiveorganismal biologyneurosciencegenomicscancergenetic basis of diseasebiology of cellsHigh School

    1901

    views

    333

    downloads

    0

    comments

    2

    adaptations

    Lizard Evolution Series Collection
    The species of Anolis lizards of the Caribbean provide a living example of evolution and speciation.

    Keywords: geneticsEvolutionResources @ HHMI - BioInteractivebehaviororganismal biologySpeciationDNAphylogeny and classificationHigh School

    1687

    views

    334

    downloads

    0

    comments

    1

    adaptations

    One species, two species, red species, lead species? Phylogenetics and species concepts with Plethodon salamanders
    This lab introduces students to species concepts and basic computer-based tree-building methods using published nuclear and mitochondrial sequence data for Plethodon salamanders.

    Keywords: phylogenetic analysisTree thinkingsalamanderAudience level - Advanced UG

    2185

    views

    1805

    downloads

    0

    comments

    0

    adaptations

    DNA Subway Learning Resources
    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    Keywords: phylogeneticsIntroductoryLabbioinformaticsUndergraduateNIBLSEDNA BarcodingDNA sequenceBLASTmultiple sequence alignmentDNA SubwayInstructional SettingAudience LevelAdvancedActivity LengthExtended ProjectC1. Role of bioinformaticsC2. Computational conceptsC4. Bioinformatics toolsC5. Data retrievalC8. Data types

    2280

    views

    227

    downloads

    0

    comments

    0

    adaptations

    Global Temperature Change in the 21st Century
    This is an FMN participant modification of the TIEE module "Global Temperature Change in the 21st Century," authored by Daniel R. Taub and Gillian S. Graham in 2011.

    Keywords: ecologyIntroductoryfmnLectureUndergraduateData DiscoveryInstructional SettingAudience LevelActivity LengthMore than 1 hour

    2147

    views

    290

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search