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    Data Ethics
    Data ethics and the use of digital data

    Keywords: data scienceresearch ethicsdata ethics

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    Exploring Data with BISON
    A module to explore aggregated observation and collection information, through BISON, or Biodiversity Information Serving Our Nation (https://bison.usgs.gov), a tool for visualizing GBIF data.

    Keywords: Querying databasesdata in the classroombiodiversity informaticsnatural history collectionsGBIFBISON

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    Biological Diversity in Wetlands: Applying the Scientific Method
    An introduction to the Scientific Method for Introductory Biology students using plant and animal richness and environmental data from ephemeral ponds and permanent wetlands.

    Keywords: Resources @ ESA - TIEEintroductory biologyscientific methodspecies richnessaquatic ecologyfmnDIGenvironmental variationMicrosoft Excelhabitat permanencyupper level wetland ecology

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    Critical Zone Science Part II
    As part of our effort to model the redwood forest water budget, we used the InTeGrate Unit 5.2 to put numbers to pathways.
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    Transpiration
    In this lab, students will examine differences between C3 and C4 plants in their transpiration rates.

    Keywords: plant physiologybotanylaboratoryResource Type

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    Transpiration
    In this lab, students will examine differences between varieties of tomato plants in their transpiration rates.

    Keywords: plant physiologybotanylaboratoryResource Typetranspirationtomatofood security

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    Seed Dispersal in Tropical Forests
    In this activity, students use data from published studies to understand patterns of seed dispersal and apply these ideas to the design of a conservation area.

    Keywords: ecologyResources @ HHMI - BioInteractivecommunityplantsdiversityScientific Process

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    Changes in Lake Ice: Ecosystem Response to Global Change
    Data Set included in included in Teaching Issues and Experiments in Ecology (TIEE) Volume 3

    Keywords: Resources @ ESA - TIEE

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    Bioinformatics: CpG Islands
    This is an introductory bioinformatics exercise intended for use in a genetics course.

    Keywords: geneticsepigeneticsbioinformaticsNIBLSEcpggenome database

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    My Fish Tank: An Active Learning Activity for Bacterial Nitrogen Metabolism
    This active learning activity introduces students to the second part of the nitrogen cycle, nitrification. In terrestrial and aquatic environments, bacteria from the Nitrosomonas and Nitrobacter...

    Keywords: nitrogen cyclenitrificationnitrifying bacteria

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    2013-Boscolo-Stellato-Undergraduate study of harmonic and parametric motion of a simple spring-mass system from motion waveforms
    In this paper, we describe a laboratory exercise that caters to beginning students while giving those with more background an opportunity to explore more complex aspects of the motion.

    Keywords: laboratoryexperimentspring massair frictionapparatuswaveforms

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    Peek into Plant Diversity using Herbarium Specimens (Online!)
    This exercise introduces herbarium specimens and how they are used for research. Students contribute to specimen "digitization" using the citizen science platform Notes from Nature, and they work...
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    GEA Introductory lesson on BLAST
    The "Introduction to BLAST using Human Leptin" exercise aims to introduce students to the use of the Basic Local Alignment Search Tool (BLAST) to identify related sequences and compare similarity...

    Keywords: geneticsProbabilitydatabasebioinformaticsphylogenetic analysisgenomicsBLASTProtein sequenceSimilarity searches

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    Behavioral Genetics: Investigating the genes of a complex phenotype in fruit flies
    Introductory genetics laboratory published as GSA Learning Resource

    Keywords: behaviorbioinformaticsNIBLSEdrosophilagenetic basisfruit fliesmodel organism

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    Applying phylogenetic tree building in MEGA X to forensic applications for identifying unknown specimens
    This exercise is designed to guide a learner through the construction of phylogenetic trees as a means of addressing research questions in forensic science such as the identification of previously...

    Keywords: taxonomyBioinformatics and GenomicsDNA Barcodinginvertebrate phylogeneticsforensic entomology

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    Environmental Drivers of Ecosystem Carbon Fluxes from Minutes to Years
    Students build on fundamental concepts of ecosystem production and carbon cycling, combining this knowledge with open long-term data from ecological and meteorological networks to uncover the...

    Keywords: climate changecarbonPlant EcologyBiogeochemistryResource Typecarbon cyclingproductivitynet ecosystem productiongross primary productionecosystem respirationcarbon fluxes

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    Introduction to nucleotide sequence analysis and protein modeling in MEGA and PyMol using coronavirus SARS-CoV-2
    Introduction into computational approaches in phylogeny and protein modeling based on coronavirus SARS-CoV-2 (caused COVID-19 pandemic). Two self-guided tutorials for standard lab classes of 2.5...

    Keywords: phylogeneticsundergraduate educationbioinformaticsNCBICOVID19coronavirusMEGAPyMolvirtual labPDBprotein modelingSARSSARS-CoV

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    Healing the scars: A tropical rainforest carbon cycling module implemented in a Forest Ecology course
    This publication describes my implementation of this module on tropical rainforest carbon cycling in an undergraduate forest ecology course for majors in the Department of Silviculture and Forest...

    Keywords: carbon cyclingnutrient cyclingenergy flowecosystem productivity

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    2010-Bruce-Conrad-Ordinary_Differential_Equations_A_Systems_Approach
    This is an author posted second edition to the text which was originally published by Prentice Hall in 2003.

    Keywords: differential equationstextbook

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    Sequence Similarity: Introducing Biological Databases to Community College Biology Students
    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    Keywords: phylogeneticsbioinformaticssequencingFASTANCBINIBLSEalgorithmsincubatorsBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixneighbor-joining distance matrixCourseSourcephylogramZika virus

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