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    2012-Brian_Ingalls-Mathematical_Modelling_in_Systems_Biology
    This text provides an introduction to dynamic mathematical modeling of cellular processes. The emphasis is on using computational tools to investigate models of cellular phenomena.

    Keywords: biologygene regulatory networksModelsmetabolic networkssignal transduction pathwayselectrophysiology

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    2017-Russell+Herman-A_First_Course_in_Differential_Equations_for_Scientists_and_Engineers
    This is a self-published text book with excellent coverage and solid mathematics and theory to support applications.

    Keywords: textbookengineeringapplications

    113

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    2015-Eric_Sullivan-Numerical Methods_An_Inquiry-Based_Approach_with_Python
    This is an OER effort on the part of Eric Sullivan to explore the joy of numerical methods. He has provided several versions.

    Keywords: pythonnumerical analysisNumerical Methods

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    2014-Jeffrey_Chasnov-Lecture_Notes_on_Introduction_to_Differential_Equations
    The differential equations text is 128 pages and develops and motivates the theory of the material nicely, with links to YouTube lectures to assist.

    Keywords: differential equationsbiologytextbook

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    2021-G_Nagy-Ordinary_Differential_Equations
    This is an introduction to ordinary differential equations. We describe the main ideas to solve certain differential equations, like first order scalar equations, second order linear equations, and...

    Keywords: differential equationstextbook

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    Build Multiomic and Visualization Skills in Bioscience Lecture
    This resource promotes inclusive learning by using all free platforms to extend the central dogma to an applied experience. Genomics is focused on with literature reviews that are performed to...

    Keywords: geneticsBiochemistryBiology and Biochemistry EduationProtein StructureBioinformatics and GenomicsFunctional GenomicstranscriptomicsproteomicsRNAseqClinical genomicsprotein structure modelingInclusive teaching3D protein structure /function analysisinclusive classrooms3D protein structuresinclusivegene

    1101

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    For a Racially-Just, Inclusive, Open, STEM education: The RIOS Institute imagines an Open Education as the radical idea that education should be affordable, accessible, equitable, inclusive, and relevant to everyone
    As we engage in Open STEM Education, “Open for Whom?” becomes an increasingly urgent question. Why should we invest in an education that is free, if it does not attend to the inclusion of...

    Keywords: social justiceriosNABT 2022

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    3-006-Buoyancy-ModelingScenario
    We offer data from a physical experiment in which the depth of a container in water is measured and ask students to build a model of buoyancy based on Newton's Second Law of Motion and a Free Body...

    Keywords: data collectionexperimentbuoyancyNewton's Second Law of Motion

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    3-017-StackedCoffeeFiltersFalling-ModelingScenario
    Data on free falling 2, 4, 6, and 8 stacked coffee filters is offered. Students form a model using a resistance term proportional to velocity, velocity squared, or velocity to some general power....

    Keywords: dataresistancefalling bodycoffee filterstacked

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    3-027-BobbingDropping-ModelingScenario
    We present two exercises in which we ask students to model (1) falling object experiencing terminal velocity and (2) bobbing block of wood in liquid. We model the motion using Newton's Second Law...

    Keywords: drug resistancedirectedbuoyancyfree fallstatic equilibriumdisplacement

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    3-073-EarthQuakePartII-ModelingScenario
    Your goal here is to determine how much friction/damping should be designed into a building to keep the roof from moving too far (which would result in the entire building collapsing) when it...

    Keywords: earthquakevibrationdampingamplitudespring-mass systemsteady-state solutionunderdamped

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    3-076-CircuitBuilding-ModelingScenario
    In this project students will establish a mathematical model for an electric circuit as a second-order ordinary differential equation with constant coefficients.

    Keywords: simulationexperimentMultisimcircuitinductancecapacitorKirchhoff's Voltage Lawresistor

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    3-140-TwoSpringsOneMassFixedEnds-ModelingScenario
    Students build a model of a two spring, single mass with fixed end configuration and then plot solutions to experience the motion.

    Keywords: massundampedFree Body Diagramspringstwo springsoscillationspring constantfixed ends

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    Inquiry-based hypothesis testing using phylogenetic trees in MEGA
    A key learning objective in biology is applying bioinformatics tools to test a real-life question. These inquiry-based modules have students assemble and align data, and construct simple...

    Keywords: phylogeneticsbioinformaticsFASTANCBIBLASTmultiple sequence alignmentsequence similarityCourseSourceZika virusMEGAalcohol metabolism

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    “Leveling Up” In Your Favorite Video Game Math Modeling Activity
    Students write linear equations that represent their model for solving a problem about playing video games.

    Keywords: modelingNIMBioslinear equationsmiddle grades (4-9)Middle SchoolSystems of Equations

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    Regression: Tree Rings and Measuring Things
    Students develop scatter plots of growth rings by tree diameters and determine the equation of their best fit line.

    Keywords: NIMBiosregressiontree ringsline of best fit

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    Using Digitized Collections-Based Data in Research: A Hands-On Crash Course in Ecological Niche Modeling
    Step-by-step, hands-on instruction on ways to access and download these specimen data, how to process climate layer data, and how to apply Maxent software to construct ecological niche models.

    Keywords: ecology labbiodiversity informaticsnatural history collectionsMicrosoft Excelbiodiversity collectionsRstatsecological niche modelingQGISENMToolsMaxent

    1997

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    National Ecological Observatory Network: A Data Source For Your Classroom
    Poster on NEON resources for use in research and education presented at the 2019 BioQUEST & QUBES Summer Workshop.

    Keywords: faculty mentoring networksNEONNational Ecological Observatory Network

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    Links to Avida-ED spreadsheets for Active LENS and BioQUEST 2018
    Avida-ED materials and resources for Active LENS and BioQUEST 2018.

    Keywords: avida-edSummer Workshop 2018

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    Serenity now! Keep calm and do science with real data in the classroom
    Session on using real data in the classroom with Serenity, a platform-independent browser-based interface to data science tools for the classroom.

    Keywords: data scienceBIRDDtool:serenitySummer Workshop 2018Galapagos

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