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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Dynamic Programming
    In bioinformatics, dynamic programming is mainly used to align nucleotide and amino acid sequences, and to predict RNA and protein folding from primary sequence data.

    Keywords: RNAamino acid sequenceSequence alignmentdynamic programmingprotein folding

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    Unveiling Lizard Evolution: Graphical Insights into Behavioral Ecology in the Era of Climate Change
    This lesson targets entry-level undergraduate students to enhance their proficiency in comprehending and interpreting scientific graphs. The lesson incorporates group discussions centered around...

    Keywords: evolutionary ecologygraph interpretationfmnBioGraphIrepresentation in STEM

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    BIOME Avida ED Report video - YouTube
    Avida-ED is a digital evolution software program that allows students to ask questions and test hypotheses related to evolutionary concepts. Our working group explored how to incorporate Avida-ED...
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    Avida-ED Experimental Evolution Project
    Outline to a research project based on Avida-ED's digital organisms
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    Faculty Mentoring Networks: Community Professional Development for the Digital Age
    Poster for BioQUEST Summer Workshop 2019 What is an FMN? What is it like to be in one? What are the benefits?

    Keywords: fmn

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    Exaggerated Traits and Breeding Success in Widowbirds
    Teaching Notes on the Exaggerated Traits and Breeding Success in Widowbirds

    Keywords: Evolutionexperimental designsexual dimorphismsexual selectionNatural SelectionWidowbirdsbirdintrasexual selectionintersexual selectionhandicap hypothesis

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    The Evolution of Color Vision in Monkeys: From Nucleotides to Ecology
    This case study examines the evolution color vision in Old World and New World monkeys from multiple biological perspectives.

    Keywords: phylogeneticsgenescase studybiologyResources @ NSF - NCCSTSColor visiondichromatictrichromaticnucleotidesproteinsopsinscell functioncone cellsphotoreceptorsspectral shiftgene duplicationmeiosissex-linkedfood gatheringmonkeysprimatesResources @ QUBES - Teaching & Referenceundergraduate biology education

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    The Evolution (and Coevolution) of Flowering Plants
    Module on coevolution developed by AIM-UP. In the module students utilize natural history collections.

    Keywords: moduleResources @ AIM-UP!Coevolutionpollination biologynatural history collections

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    Teaching Biodiversity with Museum Specimens in an Inquiry-Based Lab
    In response to the growth of biology datasets and broad efforts to digitize data, an increasingly important skill for science students is the management and analysis of large datasets. We designed...

    Keywords: data analysisnatural historyphylogenyBiodiversitymammalsAllen's RuleBergmann's Ruleecogeographymuseum research

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    Using computational molecular modeling software to demonstrate how DNA mutations cause phenotypes
    Students require a deep understanding of the central dogma before they can understand complex topics such as evolution and biochemical disorders. However, getting undergraduate biology students to...

    Keywords: Protein Structurecomputational modelingcentral dogmaplant leaf structurePhenotype/Genotype

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    2005-JC_Sprott-Dynamical Models of Happiness
    A sequence of models for the time evolution of one’s happiness in response to external events is described.

    Keywords: happinessoscillation

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    How amphibians are impacted by Chytridiomycosis with Keely Rodriguez
    Keely Rodriguez is a Ph.D. student at the University of Nevada Reno in the Ecology, Evolution, and Conservation Biology department. In this interview, Keely discusses her background and her...

    Keywords: Disease ecologyamphibians

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    Got Milk? Biome 2021 Lightning Talk
    The Got Milk? working group plans to use lactase persistence evolution as a case study to teach genetics in large introductory biology courses. While developing these resources, we will be mindful...

    Keywords: geneticsintroductory biologyundergraduate researchundergraduate educationStudent misconceptionsbiasdiversitylactase persistenceraceBIOME 2021

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    BIRDD Presentation at NABT November 2021
    This publication captures parts of the BIRDD workshop at NABT in November 2021. It contains the workshop slides and links to two hands-on BIRDD activities.

    Keywords: EvolutionGalapagos

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    Exploring Population Change without Selection: Avida-Ed Lab Book Exercise 4
    An introductory activity exploring how a population changes without natural selection using the Avida-ED simulation.

    Keywords: population geneticsEvolutionavida-edsoftware simulationsSelection

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    Louse Genetics, Genomics, and Gene Function...Oh My!
    In this module, students will be investigating a louse gene with an unknown function to determine if it might be important in the evolution of the louse ecomorphs.

    Keywords: parasitesgenomicsgene sequence analysisFunctional Genomics

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    Louse and Human Coevolution
    This module examines the complicated co-evolution of Lice, Humans, and Great Apes

    Keywords: phylogeneticsBiodiversityparasitesCoevolutionhuman evolution

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    Altruism Simulation Activity
    An altruism activity that uses a NetLogo altruism simulation.

    Keywords: Evolutiontool:netlogoanimal behavioraltruism

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    Summer 2019 Biobytes
    This series includes the four Biobytes that were piloted at the 2019 BioQUEST / QUBES Summer Workshop titled, “Evolution of Data in the Classroom: From Data to Data Science”.

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Monkey Opsins
    This case will examine the evolution of trichromatic vision in old world monkeys.

    Keywords: modulephylogeneticsecologycell biologymolecular geneticsResources @ EvoEd

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