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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Implementing an online module on microbe-plant interactions in the context of ecological disturbance for Microbiology and Biochemistry courses in India
    This module explores tropical forest gap dynamics and helps students develop hypotheses about climate-related changes in plant-microbial interactions and was implemented in Microbiology and...

    Keywords: data analysisscientific methoddata interpretationdisturbance ecologyexperiential learningCarbon sequestration in tropical rainforestPlant Microbial interactionsCanopy GapUndergraduate MicrobiologyNational Education Policy 2020

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    For a Racially-Just, Inclusive, Open, STEM education: The RIOS Institute imagines an Open Education as the radical idea that education should be affordable, accessible, equitable, inclusive, and relevant to everyone
    As we engage in Open STEM Education, “Open for Whom?” becomes an increasingly urgent question. Why should we invest in an education that is free, if it does not attend to the inclusion of...

    Keywords: social justiceriosNABT 2022

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    QUBES: An education gateway for accelerating undergraduate biology education reform
    Poster about QUBES as an education gateway presented at the 2020 Partners@QUBES Leadership Summit.

    Keywords: cyberinfrastructureeducation gateway

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    2015 SMB Minisymposium: Topics in Biomathematics Education
    Collection of presentations given at the 2015 SMB Minisymposium: Topics in Biomathematics Education

    Keywords: SMB

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    Collections Education Coffee Break Series Episode One: What Can We Learn From an Insect Specimen Label?
    In the first episode of the Collections Education Coffee Break Series we speak with Anne Basham from SCAN and the Biodiversity Outreach Network. ...

    Keywords: natural history collectionsinformal science learninginformal educationMulti-Modal learningmultiliteracyspecimen baseddigitizationdigital specimen

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    The RIOS Institute Strategic Plan
    The Institute for a Racially Just, Inclusive, and Open STEM Education (RIOS Institute) is a virtual synthesis center led by a diverse set of individuals at the interface of open education, STEM...
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    VISABLI - an RCN-UBE for Visualizations, Interactive Simulations, and Animations for Biology Learning & Instruction (RCN-UBE Introduction)
    Our network improves instructional multimedia design for biology education by fostering communication and collaboration among members of three communities: undergraduate biology instructors,...

    Keywords: RCN-UBE Introduction

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    QUBES: An education gateway for professional development, OER sharing, and project support
    Poster about QUBES as an education gateway presented at the 2019 ASCN Transforming Institutions

    Keywords: cyberinfrastructureeducation gateway

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    Using Science Education Gateways to Improve Undergraduate STEM Education: The QUBES Platform as a Case Study
    This paper describes BioQUEST's vision for the QUBES platform as an engine for science education reform. 

    Keywords: Science Education Gateway

    634

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    Sustainability and Justice: Challenges and Opportunities for an Open STEM Education
    Combining understanding of OER sustainability and equity and justice to carve out ideas for the future of STEM open education.

    Keywords: sustainabilityOERsocial justicenonprofitdigital library

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    Inclusive Pedagogy for Life Science Education Tagging Ontology
    Inclusive Pedagogy for Life Science Education Tagging Ontology

    Keywords: ontology

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    Videos on Java for courses at University of Tennessee
    Eight videos developed by Hong Qin about using Java at the University of Tennessee Chattanooga

    Keywords: videosjavabioinformaticsgenomicsyoutube

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    Java for-loop, investment problem, with debug flag usage demo
    BigJava Chapter 6, UTC CPSC1100 Fall 2017. Debug flag usage is shown.

    Keywords: videosjavabioinformaticsgenomicsyoutubeBig Java

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    Screen Casts for Foundations of Bioinformatics at UCSD
    Collection of videos developed by Barry Grant at UCSD for his course, BGGN-213

    Keywords: videosbioinformaticsgenomicsyoutubescreen cast

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    How do we do Bioinformatics?
    A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/

    Keywords: bioinformaticsgenomicsyoutubescreen cast

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    What is Bioinformatics?
    This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...

    Keywords: videosbioinformaticsgenomicsyoutubescreen castintroductory bioinformatics

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    Foundations of Bioinformatics (BGGN-213)
    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.

    Keywords: bioinformaticsgenomicsyoutubescreen cast

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    ProteinPhysiochemistry
    How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.

    Keywords: videosbioinformaticsproteinsgenomicsyoutubeprotein physiochemistryExPasy ProtpramSOSUI serverPSortB

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    LEAGSEA
    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    Keywords: videosbioinformaticsgenomicsyoutubeLEAGSEAgene set enrichmentLeading Edge Analysis

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    Using Phyre2
    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    Keywords: videosbioinformaticsproteinsgenomicsyoutubephyre23DLigandSite

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