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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Lesson IV - Comparative Genomics
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    Interconnections in The Open Ecosystem
    Presentation on open education and open science given as the keynote address at the 2019 BioQUEST & QUBES Summer Workshop

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Prioritizing your Data Science Curriculum
    This is the summary powerpoint of the Monday session at the BioQUEST / QUBES 2019 Summer Workshop including the description of the student data project on height change overnight.

    Keywords: data scienceOER2019 QUBES/BioQUEST Summer Workshopdata science educationNASEM

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    Investigating human impacts on stream ecology: locally and nationally
    How does nutrient pollution impact stream ecosystems locally and nationally?
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    Investigating the Ecology of Mosquitoes and Birds in Hawaii
    Examining biotic and abiotic environmental factors explain the historic, present, and future prevalence and range of avian malaria in Hawaii. The activity also asks how this affects local...

    Keywords: data analysisintroductory biologyInvasive SpeciesbirdsHawaii County

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    Investigating human impacts on local Hawaiian stream ecology
    Students learn about stream ecology on the island of Hawaii using data available through USGS and University of Hawaii websites and develop an understanding for potential stream changes due to...

    Keywords: climateStream ecologyHawaii CountyTopographyMap ReadingRainfall

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    The Polar Bear of the Salt Marsh? Warming Tolerance Limits of Local Species
    National Center for Case Study Teaching in Science- In the adaptation exercise, students explore connections between saltmarsh sparrow declines and declining populations of local species that live...

    Keywords: Coastal wetlandsConnecticutmanagementnortheastsea-level risesalt marsh

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    Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
    This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.

    Keywords: phylogeneticsbioinformaticssequencingFASTANCBINIBLSEalgorithmsincubatorsBLASTmultiple sequence alignmentsequence similarityBLOSUM scoring matrixneighbor-joining distance matrixCourseSourcephylogramZika virus

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    Quantifying and Visualizing Campus Tree Phenology
    This lesson, published on CourseSource, enables collaborative teams to collect, quantify, and analyze observable seasonal changes in nature.

    Keywords: ecologyBiodiversityphenologyplant biologyCourseSource

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    Changing Faculty Practice: Promoting the Scholarship of Teaching with Faculty Mentoring Networks
    Poster presented at Transforming STEM Higher Education: Confirming the Authority of Evidence, AAC&U 2018

    Keywords: faculty mentoring networksquantitative literacyCommunities of Practice

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    Agent-Based Modeling Course Materials
    Materials created for an upper level ABM course. Prerequisite: Students have taken either (a) another modeling course, or (b) the introductory computer science sequence.

    Keywords: agent-based modelingindividual-based modelingcourse materials

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    Two-Way ANOVA
    In this lesson, students will learn the necessary statistical terms to understand two-way ANOVA, how to visualize their data, how to perform two-way ANOVA and interpret their results, and how to...

    Keywords: undergraduate researchANOVA

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    Regulation of Sex Determination
    This activity accompanies the HHMI BioInteractive module Sex Verification of Athletes (​https://www.hhmi.org/biointeractive/testing-athletes​). It provides students with exercises to explore the...
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    Morphological, Anatomical and Molecular Analysis of Plant Phylogeny and Diversity
    In this lab, students perform phylogenetic analyses on morphological, anatomical and molecular data, and compare.

    Keywords: morphologyphylogenylaboratoryplantsmolecular analysisstele architecture

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    The Mystery of the Missing Martens
    National Center for Case Study Teaching in Science- this interrupted case study introduces basic modeling to investigate a decline in an American marten population on an island in Southeast Alaska.

    Keywords: modelingsurvivaldata analysisvital ratessurvivorshippopulation ecologyage structurefecundityWildlife Biologymodellingmartensbirth ratelife table

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    The Polar Bear of the Salt Marsh?
    National Center for Case Study Teaching in Science- in this interrupted case study, students follow a young naturalist as she explores why saltmarsh sparrows are increasingly rare in coastal...

    Keywords: Coastal wetlandsConnecticutmanagementnortheastsea-level risesalt marsh

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    Lesson I - Introduction to Genome Solver
    Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Part I is the Introduction to the Genome Solver Project.

    Keywords: Bioinformatics EducationBioinformatics and Genomics

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    Breeding synchrony in colonial birds: from local stress to global harmony
    This is a supplemental resource for ABM

    Keywords: NetLogoagent-based modelingIndividual & Agent Based Modeling

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    Draft Version: Energy Balance Models
    This module introduces the student to the process of mathematical modeling.

    Keywords: modulemathematical modelingbenergy balanceclimate modelDIMACSResources @ DIMACSclimatein-class activityResources @ QUBES - Teaching & Referencescienceexperiment

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    Joel E. Greengiant Learns About Peas: From Nucleotides to Selection
    This case study follows purveyors of peas, Joel E. and Jolene Greengiant, as they learn about the origin, biochemistry, genetics and eventual artificial selection of sweet (wrinkled) peas, all in...

    Keywords: geneticspopulation geneticsEvolutionintroductory biologycase studybiologyResources @ NSF - NCCSTSmeiosisMendel’s peaspea plantPisum sativumMendel’s Lawsmolecular geneticsmutationnucleotide insertionartificial selectionstarch synthesisstarch branching enzymeplant domesticationlegumesResources @ QUBES - Teaching & Reference

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