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Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Box of Lessons: A Toolkit for Introducing Students to Biomolecular Structure and Function
    This is a poster describing a collection of open educational resources that were developed by faculty participating in the Molecular CaseNet Faculty Mentoring Network in Spring 2022. The collection...

    Keywords: bioinformaticsbiomolecular structureProtein Data Bankresources @ Molecular CaseNet

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    The Tentative Nature of Science
    This part focuses on the tentative nature of science

    Keywords: scienceCOVID19Tentative Nature

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    Quantitative Biology at Community Colleges: Building a Community of Biology and Math Faculty to Develop and Disseminate Open Educational Resources
    This is a poster presented at the SABER West 2020 conference. We introduced the grant's goals and objectives, described the leadership team and disseminated the information about the first network...

    Keywords: community collegesquantitative biologyinterdisciplinaryCommunities of Practicebiology and math

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    Using the QUBES platform and NEON faculty mentoring networks to build, adapt, and publish data-driven open educational resources
    This video provides an overview of the NEON Data Education Faculty Mentoring Networks and an example of published QUBES resource implementation in the classroom.

    Keywords: NEON FMN

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    NEON Data in the Classroom: Quantifying Spatial Patterns
    Students build on fundamental concepts of spatial patterns and combine this knowledge with the open-data from the National Ecological Observatory Network to quantify spatial autocorrelation and...

    Keywords: RR Markdownlandscape ecologygroup-neon2018spatial statisticsfractalsrasters

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    Investigating Leaf Litter Decomposition and Invertebrate Communities in Streams
    Students utilize the provided dataset to engage in an open-inquiry project on the impacts of abiotic and biotic factors on stream macroinvertebrate communities and/or leaf litter decomposition.

    Keywords: Resources @ ESA - TIEEInvasive SpeciesfmnDIGspecies tolerance curvesdiversity indiceslitter decomposition ratesfreshwater ecologyopen-inquiry

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    Rescuing Data: Preserving Data for the Future
    Meet Diane Srivastava, director of the Canadian Institute for Ecology and Evolution, and learn how they sythesize and save biodiversity data.

    Keywords: metadatadigital datadata skillsBiodiversity Science

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    Biogeography of Hantavirus Hosts
    Using QGIS, this module introduces students to zoonotic pathogens, host biogeography, the "One Health" concept, forming hypothesis, and natural history museums within the Hantavirus system.

    Keywords: human-environmental interactionsmammalsbiogeographyhypothesis formulationdigitized natural history collectionshuman healthQGISzoonotic diseasesone healthrodentsPathogens

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    Turning ecological research into engaging online modules for undergraduates through Gala/OCELOTS
    Learn how to create and implement online modules in tropical ecology for undergraduates. In an NSF-funded network, researchers and specialists in 4DEE, pedagogy, interactive data tools, and media...

    Keywords: tropical biologyOCELOTSLDC2023

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    Grassy Narrows and Muskrat Falls Dam: The Central Limit Theorem and a t-test
    Students are introduced to concepts of sampling distributions and hypothesis testing using a simulation applet, elementary hypothesis tests, t-tests, and p-values as they compare a given fish...

    Keywords: statisticsmathematicsbiostatisticsecologybiologygraphingp-valuest-testshypothesis testingin-class activityZoologymercury biogeochemistrybiostatistics - generalfish populationqbccBiogeochemical cyclesInterpret graphsSolving Equations and InequalitiesConcepts in StatisticsElementary Hypothesis TestingMethylmercurydamsBioaccumulationtraditional dietsmercurymercury poisoningnative peopleindigenous populationCanadahydroelectricexplaining statisticsusing statisticsMake probability calculations

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    BioTA Podcast Working Group Lightning Talk - YouTube
    This lightning talk outlines out work to develop a set of podcasts and in0class activities. The podcast episodes on metagenomics in general are available. Additional resources and additional...

    Keywords: Flipped classroommetagenomics

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    Box-of-Lessons Review, Fall 2022 - YouTube
    This video described the working group activities for BIOME Institute 2022 - Fall working group

    Keywords: carbohydratesproteinsNucleic Acid Structurebiomolecular structurebiomolecular visualizationProtein Data Bankresources @ Molecular CaseNetBIOME 2022pilotinglipidsbiomolecules

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    Supplemental Materials for Beagle Investigations Return with Darwinian Data Manuscript
    Supplement 1 contains an example laboratory exercise for introducing the BIRDD resources. Supplement 2 contains a list of web accessible data resources to supplement the existing BIRDD resources.

    Keywords: Galapagosdata on darwins finches

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    Yeast Scramble Lab Manual v3
    This laboratory manual includes protocols for SCRaMbling of yeast cells as well as phenotypic characterization. Appropriate student exercises are also included. This resource was developed as part...
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    A discussion about tornado epidemiology with Dr. Kim Klockow McClain
    Are you ever curious about how tornados impact communities, which communities are most at risk, what are the determinants of fatality from tornados, and other related questions? Dr. Kim Klockow...

    Keywords: epidemiologyweathertornados

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    Community Conversation: Publishing Conference Materials on QUBES
    Follow the link to the webinar video, "Publishing Conference Materials on QUBES". In this video, an overview of QUBES will be given, followed by information on how conference participants and...
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    BioQUEST Webinar: CourseSource - YouTube
    Follow the link to the webinar video, "An Introduction to the CourseSource Journal and Making Your Own Collections". This webinar provides an overview of CourseSource, how to publish your teaching...
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    Venom: To Kill or Cure?
    In this case study, students will explore concepts of evolution, protein structure and function, taxonomy, and methods of scientific inquiry in a real-world way.

    Keywords: EvolutionphylogeneticsidigbioAP Biologytaxonomynatural history collections3D modelsoVertVenomsnakesherps

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    Food, Energy and Water Learning Modules (FEWLM) Workbooks
    FEWLM is a low-cost inquiry-based interdisciplinary STEM prototypical curriculum built on Next Generation Science Standards, systems thinking and informed engineering design pedagogy.

    Keywords: K-12inquiry-based learningNext Generation Science StandardsSystem Thinking

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    GBIF Tutorial - BLUE Resource
    A user guide and video instructions for GBIF

    Keywords: Querying databasesdatabasedata in the classroombiodiversity informaticsbiodiversity collections

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