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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Biological Diversity in Wetlands: Applying the Scientific Method
    An introduction to the Scientific Method for Introductory Biology students using plant and animal richness and environmental data from ephemeral ponds and permanent wetlands.

    Keywords: Resources @ ESA - TIEEintroductory biologyscientific methodspecies richnessaquatic ecologyfmnDIGenvironmental variationMicrosoft Excelhabitat permanencyupper level wetland ecology

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    The Effect of Climate Change on Butterfly Phenology
    In this module, students explore changes in butterfly phenology through the use of natural history collections data.

    Keywords: ExcelResources @ ESA - TIEEclimate changefmnphenologynatural history collectionsDIGbutterflyinterspecific interactions

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    Sleep and Learning Lab
    Students use sleep and exam data from Introductory Biology students to investigate the question: Does a circadian rhythm, the sleep-wake cycle, influence an important mammalian adaptation, the...

    Keywords: animal behaviorlab activitycircadian biologysmall group workthink-pair-shares

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    Modeling Soil Fluxes with NEON Data
    This activity is an exploratory activity to understand rates of change of soil carbon dioxide in different ecosystems using data provided by the National Ecological Observatory Network (NEON,...

    Keywords: modelingdata analysisplant/soil/water interactions

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    Module 3: What on Earth is a Herbarium?
    The goal of this activity is to introduce students to herbarium specimens and why they are an important source of information. The emphasis of this activity is on examining the types of data that...

    Keywords: natural history collectionsherbariumHerbarium digitizationYnez Mexia

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    Building an Inclusive Botany - Structuring in Class Discussions
    Driven by the national conversation on systemic racism, ongoing inequities, appeals to decolonize science, and the many recent calls for diversity, equity, accessibility, and inclusion, we use...

    Keywords: botanyplant sciencediversityAccessibilityHistory of Sciencetraditional knowledgeCommunityScienceColonialismSpecimen Digitization

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    REMNet - A National Network for Integrating the Study of Microbiomes into Course-based Undergraduate Research Experiences (RCN-UBE Introduction)
    The mission of REMNet’s “Microbiomes for All!” is to serve as a centralized hub for information and resources on the integration of microbiome studies into the undergraduate curriculum. RemNet...

    Keywords: RCN-UBE Introduction

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    Build Multiomic and Visualization Skills in Bioscience Lecture
    This resource promotes inclusive learning by using all free platforms to extend the central dogma to an applied experience. Genomics is focused on with literature reviews that are performed to...

    Keywords: geneticsBiochemistryBiology and Biochemistry EduationProtein StructureBioinformatics and GenomicsFunctional GenomicstranscriptomicsproteomicsRNAseqClinical genomicsprotein structure modelingInclusive teaching3D protein structure /function analysisinclusive classrooms3D protein structuresinclusivegene

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    HSI - Student Research Journal - Vol.1 Issue 2 - Fall 2020 v.1.0
    The Headwaters Research Experience students have produced some fascinating research throughout our 10-week program. We encourage all to read their reports in our Vol. 1 - Issue 2 - Fall 2020...

    Keywords: scientific methodscience education

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    Failing (in order) to succeed: Exploring how students cope with science failures in research-based courses
    Slides and related materials from the presentation given by Dr. Lisa Corwin as a part of the 2020 BIOME Institute.

    Keywords: researchresearch-based classroom instructionFailureresearch failure

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    Cleaning Biodiversity Data: A Botanical Example Using Excel or RStudio
    Access and clean an open source herbarium dataset using Excel or RStudio.

    Keywords: Exceldata in the classroomRStudiobiodiversity informaticsnatural history collectionsHerbariaData cleaning

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    Evolution of Caffeine Biosynthesis Enzymes
    This case focuses on exploring why plants make secondary metabolites like caffeine and how the enzymes required for making caffeine evolved.

    Keywords: Evolutioncaffeinemolecular visualization and analysisenzymesPDBMolecular Case Study

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    National Ecological Observatory Network: A Data Source For Your Classroom
    Poster on NEON resources for use in research and education presented at the 2019 BioQUEST & QUBES Summer Workshop.

    Keywords: faculty mentoring networksNEONNational Ecological Observatory Network

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    Working with plant phenology data and fitting a nonlinear model using least squares in R
    A participatory live-coding lesson on working with NEON phenology data and fitting a sine-wave model to determine when different species get and lose their leaves.

    Keywords: modelingRphenologyNEONRstatscodeparticipatory live-coding

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    Climate Change, Phenology, and Community Interactions: Helping students explore the complexity of changing ecosystems
    Students explore findings from long-term studies of migrating and hibernating animals at high elevation. Students then use this understanding to explore the phenology of species and possible...

    Keywords: species interactionsclimate changefmnphenologyDIGenvironmental variationtrophic mismatch

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    Data from: Advancing population ecology with integral projection models: a practical guide
    Review important resources for building IPMs and provide a comprehensive guide, with extensive R code, for their construction.

    Keywords: IPMintegral projection modelsdemographyelasticitylife historymatrix projection modelpopulation growth ratepopulation projection modelsensitivitystage structurevital ratesResources @ DryadResources @ QUBES - Data

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    Advancing population ecology with integral projection models: a practical guide
    Integral projection models (IPMs) use information on how an individual's state influences its vital rates – survival, growth and reproduction – to make population projections using regression...

    Keywords: IPMintegral projection modelspopulation growthreviewsdemographyelasticitylife historymatrix projection modelpopulation growth ratesensitivitystage structurevital ratesregressionResources @ QUBES - Teaching & Referencecovariatesanalytics

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    Seed Dispersal, Mutualisms, and Communities
    In this activity, students use data from published studies to understand patterns of seed dispersal and apply these ideas to understanding the evolution of mutualisms, and how mutualistic...

    Keywords: mutualismsecologyResources @ HHMI - BioInteractivecommunityplantsdiversityScientific Processlarge lecture

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    Using: "Winter Is Coming! Can you Handle the Freeze?" In an Intro BIO lecture
    I use Team Based Learning in this course, students are in permanent groups and work together on Challenge Questions each class after I give a short lecture. This Nugget was used in place of regular...

    Keywords: graphing

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    Modeling the Research Process: Authentic human physiology research in a large non-majors course
    Laboratory experiences in large-enrollment introductory science courses often utilize “cookie-cutter style” laboratory experiences due to the relative simplicity of setting up the lab...

    Keywords: data analysishypothesis testingexperimental designphysiology

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