You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Presence of Vegetation in Relation to Slope in Yosemite Valley, California
    Here we examine the relationship between the slope of a terrain and vegetation, measured by NDVI levels. I used satellite data from Yosemite Valley to analyze and test for statistical...

    Keywords: vegetation

    358

    views

    67

    downloads

    0

    comments

    0

    adaptations

    Videos on Java for courses at University of Tennessee
    Eight videos developed by Hong Qin about using Java at the University of Tennessee Chattanooga

    Keywords: videosjavabioinformaticsgenomicsyoutube

    1206

    views

    122

    downloads

    0

    comments

    0

    adaptations

    Java for-loop, investment problem, with debug flag usage demo
    BigJava Chapter 6, UTC CPSC1100 Fall 2017. Debug flag usage is shown.

    Keywords: videosjavabioinformaticsgenomicsyoutubeBig Java

    1203

    views

    277

    downloads

    0

    comments

    0

    adaptations

    Screen Casts for Foundations of Bioinformatics at UCSD
    Collection of videos developed by Barry Grant at UCSD for his course, BGGN-213

    Keywords: videosbioinformaticsgenomicsyoutubescreen cast

    1039

    views

    116

    downloads

    0

    comments

    0

    adaptations

    How do we do Bioinformatics?
    A description of the computational setup for “Foundations of Bioinformatics” (BGGN-213) See: http://thegrantlab.org/bggn213/

    Keywords: bioinformaticsgenomicsyoutubescreen cast

    983

    views

    235

    downloads

    0

    comments

    0

    adaptations

    What is Bioinformatics?
    This second screencast introduces bioinformatics, details major leaning goals & expectations of BGGN-213 and outlines the areas of bioinformatics covered in ...

    Keywords: videosbioinformaticsgenomicsyoutubescreen castintroductory bioinformatics

    1121

    views

    247

    downloads

    0

    comments

    0

    adaptations

    Foundations of Bioinformatics (BGGN-213)
    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.

    Keywords: bioinformaticsgenomicsyoutubescreen cast

    1088

    views

    239

    downloads

    0

    comments

    0

    adaptations

    ProteinPhysiochemistry
    How to determine physiochemical features of proteins using ExPasy Protpram, SOSUI server, and PSortB programs.

    Keywords: videosbioinformaticsproteinsgenomicsyoutubeprotein physiochemistryExPasy ProtpramSOSUI serverPSortB

    1098

    views

    309

    downloads

    0

    comments

    0

    adaptations

    LEAGSEA
    How to perform Leading Edge Analysis in Gene Set Enrichment Analysis by Broad Institute

    Keywords: videosbioinformaticsgenomicsyoutubeLEAGSEAgene set enrichmentLeading Edge Analysis

    1018

    views

    222

    downloads

    0

    comments

    0

    adaptations

    Using Phyre2
    How to use Phrye2 and 3DLigandSite to computationally predict protein and active site structure and binding partners (substrates/cofactors/coenzymes).

    Keywords: videosbioinformaticsproteinsgenomicsyoutubephyre23DLigandSite

    1141

    views

    234

    downloads

    0

    comments

    0

    adaptations

    Simple Heat Maps with Morpheus
    Learn how to load an Excel file of raw data into Morpheus and change between relative and global scales.

    Keywords: Excelbioinformaticsgenomicsyoutubemorpheusheat maps

    1252

    views

    248

    downloads

    0

    comments

    0

    adaptations

    How to create "funny symbols" (aka math / statistical notation) in Microsoft Word / Office
    YouTube video on using statistical notation in Microsoft Word.

    Keywords: videosonline learninggenomicsyoutubestatistics symbols

    1563

    views

    231

    downloads

    0

    comments

    0

    adaptations

    Microbiomes forAll: The Research Experiences in Microbiomes Network
    Poster on REMNet presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity

    Keywords: undergraduate researchcourse-based undergraduate research experiencemicrobiomesmicrobiomeCUREREMNet

    1086

    views

    226

    downloads

    0

    comments

    0

    adaptations

    Learning Journal Assignment on Biofilms
    This is a learning journal assignment with constructive response questions on Biofilms which undergraduate students can complete with aid of reading a research article and listening to a podcast.

    Keywords: educationPodcastmicrobiologygenomicsUndergraduateAnalysisBioflimsLearning Journal Assignmet

    270

    views

    45

    downloads

    0

    comments

    0

    adaptations

    Plasmodium Problem Space
    This problem space brings together diverse resources with the goal of helping biology teachers and learners engage in research investigations.

    Keywords: bioinformaticsproblem spacesNIBLSERNAseqmalariaplasmodium

    1429

    views

    351

    downloads

    0

    comments

    0

    adaptations

    HITS: A Network to Create Inquiry-based Case Studies | BIOME 2022
    We created the NSF-funded High-throughput Discovery Science & Inquiry-based Case Studies for Today’s Students (HITS) Research Coordination Network to address this gap. HITS brings together...

    Keywords: case studiesHigh-throughput Discovery Science & Inquiry-based Case Studies for Today’s StudentsHigh-throughput (HT) approaches

    505

    views

    94

    downloads

    0

    comments

    0

    adaptations

    Hewlett Foundation - Bates Final Evaluation Report 2021
    Evaluation findings of Hewlett Foundation award to Bates College

    Keywords: QUBES HubSTEM EvaluationSCORE Network

    846

    views

    244

    downloads

    0

    comments

    0

    adaptations

    Development of the NIBLSE Learning Resource Collection and Incubators
    Talk on the NIBLSE Resource Collection and Incubators given at several professional development confernces

    Keywords: bioinformaticsNIBLSEincubators

    1475

    views

    59

    downloads

    0

    comments

    0

    adaptations

    BioQUEST Partner Support Module: Exploring Community
    A four-week module for BioQUEST's Research Coordination Network partners on using BioQUEST's features, resources, and services to build a community that supports their project goals.

    Keywords: Resources @ BioQUESTRCNcommunitybuilding communityOnline community building

    653

    views

    441

    downloads

    0

    comments

    0

    adaptations

    How Many Salamanders are in the forest? Testing capture-recapture
    Collecting data on how populations respond to environmental change requires accurate estimates of population sizes. This activity explores one method for estimating population sizes across three...

    Keywords: salamanderCapture mark-recaptureAudience level - Introductory UG - majorsAudience level - Introductory UG - non-majors

    1991

    views

    899

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search