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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Diving into Deep Sea Data
    A module that combines NOAA's Okeanos Explorer and the iDigBio Portal to explore the deep sea!

    Keywords: Querying databasesremote sensingnatural history collectionsfishesscientific name5ESpeciesichthyologydeep sea

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    Checking Normality in R with swirl
    How to use the "three-prong" approach to check for normality

    Keywords: biostatisticsR programming languageSwirl

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    Testing hypotheses about the role of wildfire in structuring avian communities
    This module assesses the role of wildfire in the eastern US and its impact on bird communities using NEON bird survey data from pre- and post- a major wildfire in the Great Smoky Mountains National...

    Keywords: data manipulationspecies richnessANOVAspecies diversitybirdswildfireBACI design

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    2008

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    Introduction to Data Management and Metadata using NEON aquatic macroinvertebrate data
    This lesson focuses on understanding metadata, the data about the data, using aquatic macroinvertebrate abundance and species information from a variety of NEON sampling locations.

    Keywords: data managementSpreadsheetmetadata

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    Ferns are Everywhere
    Using spatial fern population data in hypothesis testing

    Keywords: hypothesis testingNumbers Countspatial distribution

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    Exploring how climate will impact plant-insect distributions and interactions using open data and informatics
    This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...

    Keywords: modelingcitizen sciencehypothesis testingdata scienceclimate changeR programming languageBiodiversityplant animal interactionsinquiry-based learningspecies distributionseco-informatics

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    The ml4bio Workshop: Machine Learning Literacy for Biologists
    Presentation on machine learning literacy for biologists at the 2019 Great Lakes Bioinformatics Conference

    Keywords: bioinformaticsmachine learning

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    Investigating Biomes with BiomeViewer
    This interactive classroom activity facilitates student learning about biodiversity through an investigation of biomes (what they are, how they're defined, their global distribution) using a free...

    Keywords: BiodiversityEcosystem EcologyBiomeViewerbiomes

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    Sampling Distributions and Null Distributions: two swirl lessons in R
    There are two complementary lessons. The first covers how sampling distributions are made and ID's their key properties. The second covers how null distributions and how the test statistic of a...

    Keywords: The Analysis of Biological Datateaching with technologySwirl

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    Species Range Over Space and Time
    In this module, students use data from natural history collections to look at range shifts related to climate variables over different time periods.

    Keywords: data in the classroomdigital resourcesclimate changenatural history collection

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    Island biogeography, spatial ecology, and macroinvertebrate species diversity in Richmond’s rock pools
    Students investigate questions of community ecology and biogeography using data from an urban rock pool ecosystem. Using ArcGIS 10, students learn to create effective maps, calculate landscape...

    Keywords: aquatic macroinvertebratesCommunity Ecologyspecies diversityGeographic Information System (GIS)spatial analysisJames River

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    Body Size Constraints in Xylem Feeding Insects: Allometric Relationships
    This module introduces body size constraints of xylem-feeding insects in the context of understanding allometric relationships. It is intended for an introductory biology audience.

    Keywords: allometryRatiosexponential equationslogarithmic equationsGenetics and Evolution

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    Binomial test
    This lesson focused on introducing students to binomial data analysis and reinforcing concepts of confidence intervals, p-value interpretation, and one- vs two-sided tests.
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    Infectious Chocolate Joy with a Side of Poissonian Statistics: An activity connecting life science students with subtle physics concepts
    Lesson on what it means for biological processes to be Poissonian, published in CourseSource

    Keywords: quantitative biologybioinformaticsmicrobiologyphysicsNIBLSEHIVCourseSourcemultiplicity of infectionPoisson Distribution

    1317

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    Salamander Mark-Recapture using SPARCnet plots with the Schnabel Method
    A salamander mark-recapture module where students field collect a third survey occasion to estimate population size

    Keywords: Field researchsalamanderCapture mark-recaptureAudience level - Advanced UG

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    IPMpack: an R package for Integral Projection Models
    IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models.

    Keywords: RR-Forgeanimalbiostatisticscomparative analysisecologylongitudinal datamodel comparisonmodel estimationprojectionssurvivaltime seriestrajectoryIPMintegral projection modelsResources @ QUBES - Software

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    The Challenge of Food
    How will we feed the estimated 9 billion people that will be on the planet by 2050? How can food be distributed equally? We’ll hear about making more nutritious food via genetic engineering and...

    Keywords: videosScience ForwardfoodGMOs

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    Beanbag Toss (Grades 6-8)
    The classroom lesson presents students with the task of developing a fair--yet challenging--beanbag toss game.

    Keywords: parametersdata collectionMeanMedian & Mode

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    Using the Environmental Column To Connect Silos
    Poster on diverse sampling techniques to increase scientific communication presented at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: interdisciplaryScientific communicationsampling techniquesSummer Workshop 2018interdisciplinary communication

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    The nose knows: How tri-trophic interactions and natural history shape bird foraging behavior
    Students investigate the role of olfaction and infochemicals on bird foraging behavior through three different quantitative modules. In this module students create graphs, generate statistics, draw...

    Keywords: Resources @ ESA - TIEEforagingfmnbehavioral ecologyDIGtrophic cascadesAntarctic foodd webs

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