You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    Phage Comparative Genomics Lab Manual
    A lab manual containing detailed instructions for several bioinformatics tools (dot plots, Phamerator maps, phylogenetic trees, and gene content similarity), all of which enable students to perform...

    Keywords: phageCUREcourse-based research experiences (CUREs)Comparative genomicsSEA-PHAGES

    1429

    views

    599

    downloads

    0

    comments

    0

    adaptations

    2013-Alicia_Caldwell-Students Rise to the Challenge of Modeling Yeast Growth Despite Sour Hiccups from Imperfect Data
    This paper describes a lab in which students in an Applied Mathematics in Biology course observe the growth of Saccharomyces cerevisiae, a yeast strain, in differing sugar concentrations for use in...

    Keywords: Saccharomyces cerevisiaelogisticyeastdeathgrowthsugaralcohol

    152

    views

    32

    downloads

    0

    comments

    0

    adaptations

    1999-F_Brauer-What Goes Up Must Come Down
    This paper is a wonderfully general analysis of the following, “It is natural to ask whether a particle propelled upwards takes longer to fall to earth from its maximum height than it takes to rise...

    Keywords: projectilefrictionfalling timerising timemaximum height

    85

    views

    41

    downloads

    0

    comments

    0

    adaptations

    1999-F_Brauer-What_Goes_Up_Must_Come_Down
    It is natural to ask whether a particle propelled upwards takes longer to fall to earth from its maximum height than it takes to rise to this maximum height for frictional forces that are nonlinear...

    Keywords: resistancefallingprojectilevertical projectile

    105

    views

    38

    downloads

    0

    comments

    0

    adaptations

    A Critical Guide to BLAST
    This Critical Guide in the Introduction to Bioinformatics series provides an overview of the BLAST similarity search tool, briefly examining the underlying algorithm and its rise to popularity.

    Keywords: NIBLSEBLASTGOBLETInstructorResources

    1120

    views

    294

    downloads

    0

    comments

    0

    adaptations

    Understanding Frameshifting
    This module contains activities to help students understand the biology of programmed translational frameshifts (PTFs) in phages, how to identify PTFs, and how to annotate them.
    859

    views

    743

    downloads

    0

    comments

    0

    adaptations

    Topics in Restoration Ecology: Restoring the Red Wolf in North Carolina
    The planet’s most endangered wolf is the red wolf, with only one wild population, a nonessential experimental group established in eastern North Carolina, of 15-17 individuals in existence as of...

    Keywords: ecologyRestoration Ecology

    702

    views

    168

    downloads

    0

    comments

    0

    adaptations

    Exploring the bottom of the ocean and TITANIC wreckage with David Gallo
    In honor of @WorldOceansDay , we had the privilege of talking with legendary oceanographer David Gallo for our latest Lunch With A Scientist episode. He shares astonishing footage of deep-sea...

    Keywords: Oceanographyocean exploration

    475

    views

    136

    downloads

    0

    comments

    0

    adaptations

    1989-EY_Rodin-S_Jaques-Countercurrent Oxygen Exchange in the Swim Bladders of Deep-Sea Fish
    Oxygen diffuses from lungs into blood, nutrients diffuse from intestinal tracts into blood and from blood into various cells, and waste products diffuse from cells back into blood.

    Keywords: fishCell Membraneflowbloodbladdercountercurrent

    110

    views

    40

    downloads

    0

    comments

    0

    adaptations

    2009-Brian_Winkel-Modelling_Growth_Of_an_OilSlick
    An oil-slick spreads at sea. From time to time, but irregularly, a helicopter is dispatched. On each trip, it arrives over the slick, the pilot takes a picture, waits 10 minutes, takes another, and...

    Keywords: differential equationssimulationparameter estimationdifference equation

    221

    views

    58

    downloads

    0

    comments

    0

    adaptations

    2019-Ekici_Plyley. Inquiry-Based_Modeling_of_Population_Dynamics_With_Logistic_Differential_and_Difference_Equations
    Inquiry-based learning activities on modeling and controlling the growth of locally relevant species, such as lionfish or sea turtles, are developed by the authors.

    Keywords: population dynamicslogisticInquiry-based modelingIBL

    167

    views

    52

    downloads

    0

    comments

    0

    adaptations

    1-139-PlantsVsHerbivores-ModeliongScenario
    In this activity, students will apply a variety of techniques for analyzing nonlinear systems (e.g., nullclines, linearization, and technologies for drawing phase portraits) to study...

    Keywords: ecologynullclinesherbivoreplant-herbivore interactionsplantlinearization

    263

    views

    243

    downloads

    0

    comments

    0

    adaptations

    Elevator Pitch: An Activity to Help Students Communicate Their Research
    In this activity, students and the research mentor co-develop an elevator pitch that students can use to communicate their research.
    676

    views

    163

    downloads

    0

    comments

    0

    adaptations

    Data Analysis Recitation Activities Support Better Understanding in SEA-PHAGES CURE
    Course-based undergraduate research experiences (CUREs) are widely known to improve student learning outcomes in the sciences. Undergraduate students have a particularly difficult time interpreting...

    Keywords: bacteriophageDNA extractionGel analysisPhage purificationTiter calculationViral replicative growth

    1426

    views

    726

    downloads

    0

    comments

    0

    adaptations

    2009-Chellaboina-EtAl-Modeling And Analysis-Mass Action Kinetics
    Mass-action kinetics are used in chemistry and chemical engineering to describe the dynamics of systems of reactions, that is, reaction networks. These models are a special form of compartmental...

    Keywords: dynamical systemschemical reactionreaction networkmass action

    149

    views

    38

    downloads

    0

    comments

    0

    adaptations

    3-055-FloatingBox-ModelingScenario
    In this scenario, we lead students through the process of building a mathematical model for a floating rectangular box that is bobbing up and down.

    Keywords: oscillationArchimedes’ Principlebuoancyoscillatory motionNewton's Second Law

    214

    views

    139

    downloads

    0

    comments

    0

    adaptations

    Module 2: Transcription Part I: From DNA Sequence to Transcription Unit
    This module illustrates how a primary transcript (pre-mRNA) is synthesized using a DNA molecule as the template. Students will learn about the importance of the 5' and 3' regions of the gene for...

    Keywords: data visualizationmolecular biologybioinformaticsGenome BrowsergenomicsTranscription InitiationTranscription Start SiteTranscription Termination Signal

    1649

    views

    3155

    downloads

    0

    comments

    0

    adaptations

    Type I Functional Response
    This module introduces the type I functional response in the context of understanding the relationship between an individual's rate of consumption and food density. It is intended for an...

    Keywords: ecologylinear equationsfood density

    830

    views

    161

    downloads

    0

    comments

    0

    adaptations

    SEAS CURE: Exploring Coral Biology Across Scales
    Complex biological concepts (like symbiosis and coral biology) that span multiple scales and cross disciplinary boundaries are often difficult for students to understand. This complexity is...

    Keywords: microscopyAnatomySymbiosisMetabolismbleachinginvertebratedinoflagellate

    3415

    views

    248

    downloads

    0

    comments

    0

    adaptations

    Exploring Phage Immunity Systems with a Scientific Reading and Communication Activity
    This jigsaw assignment is designed to increase students’ understanding of phage immunity systems, through reading primary literature and communicating key aspects.
    830

    views

    291

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search