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    Foundations of Bioinformatics (BGGN-213)
    This first short screen-cast introduces “Foundations of Bioinformatics” (BGGN-213) course at UCSD and covers some pre-course logistics.
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    What is bioinformatics?
    Short description of what bioinformatics is, it's potential applications, and what it is not.
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    A Pipeline in Paradise
    I incorporated fracking into the case study instead of just focusing on building a pipeline, which allowed us to discuss fracking with this case study.
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    Development of the NIBLSE Learning Resource Collection and Incubators
    Talk on the NIBLSE Resource Collection and Incubators given at several professional development confernces
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    What Do Trees Know About Rain?
    The data nugget was introduced to a freshman General Biology lecture class as a culminating activity for the chapter entitled "Photosynthesis". Students worked independently and collaboratively...

    Keywords: General Biology

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    Gene Expression in Stem Cells
    The module served as in introduction to the Gene Expression unit. It was implemented in two phases, a pre-class activity and an in-class activity to introduce chapter concepts and reinforce...
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    Mendelian Genetics, Probability, Pedigree, and Chi-Squared Statistics
    A lesson that requires students to work through a series of questions pertaining to the genetics of sickle cell disease and its relationship to malaria.
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    Allele and Phenotype Frequencies in Rock Pocket Mouse Populations
    A lesson that uses real rock pocket mouse data collected by Dr. Michael Nachman and his colleagues to illustrate the Hardy-Weinberg principle.
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    AIM-UP! Reading scientific literature module
    Designed to span 4 one-hour lectures, this module focuses upon developing the skill of thorough and critical reading of scientific literature.
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    Using: "Winter Is Coming! Can you Handle the Freeze?" In an Intro BIO lecture
    I use Team Based Learning in this course, students are in permanent groups and work together on Challenge Questions each class after I give a short lecture. This Nugget was used in place of regular...

    Keywords: graphing

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    Incubators: A community based model for improving the usability of bioinformatics learning resources
    Poster on Incubators, a NIBLSE and QUBES collaboration presented at Great Lakes Bioinformatics Conference - Chicago, IL

    Keywords: NIBLSEincubators

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    Cancer Discovery Activities
    These two hands-on activities are based on a Howard Hughes Medical Institute 2013 Holiday Lectures on Science video (http://www.hhmi.org/biointeractive/cancer-genetic-disease-video-highlights)...
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    Winter is Coming! Data Nuggets Module - Adapted for Preservice Elementary Teachers
    Adaptation of Data Nuggets Module Winter is Coming! for an Elementary Education Science Methods Course
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    Deadly Windows Data Nuggets Module - Adapted for Preservice Elementary Teachers
    Adaptation of Data Nuggets Module Deadly Windows for an Elementary Education Science Methods Course
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    Climate of Change: Interactions and Feedbacks between Water, Air, and Ice
    In this two to three week module, students explore short-term climate variability resulting from atmosphere-ocean-ice interactions.
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    Drivers of Avian Local Species Richness: Continental-Scale Gradients, Regional Landscape, or Local Land Cover?
    Experiment included in Teaching Issues and Experiments in Ecology (TIEE) Volume 8
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    Teaching Exponential and Logistic Growth in a Variety of Classroom and Laboratory Settings
    Experiment included in Teaching Issues and Experiments in Ecology (TIEE) Volume 9
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    Essay to students about the fallacy of fixed math ability
    Essay written in 2014 for freshmen in an intro bio course on the fallacy of fixed math ability
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    Using gross parasites to sneak even grosser equations into the introductory biology classroom
    This was an oral presentation at the 2015 Annual Meeting of the American Society of Parasitologists in Omaha, NE.
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