You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    A Critical Guide to the PDB
    This Critical Guide in the Introduction to Bioinformatics series provides a brief outline of the Protein Data Bank – the PDB – the world’s primary repository of biological macromolecular structures.

    Keywords: NIBLSEGOBLETInstructorResources

    1143

    views

    295

    downloads

    0

    comments

    0

    adaptations

    Quantifying and Visualizing Campus Tree Phenology
    This lesson, published on CourseSource, enables collaborative teams to collect, quantify, and analyze observable seasonal changes in nature.

    Keywords: ecologyBiodiversityphenologyplant biologyCourseSource

    1075

    views

    181

    downloads

    0

    comments

    0

    adaptations

    2018-Akman-EtAl-Parameter Estimation in Ordinary Differential Equations Modeling via Particle Swarm Optimization
    We demonstrate Particle Swarm Optimization efficacy by showing that it outstrips evolutionary computing methods previously used to analyze an epidemic model.

    Keywords: epidemicParticle Swarm Optimizationoptimize parameters

    138

    views

    74

    downloads

    0

    comments

    0

    adaptations

    2009-Shamim-EtAl-Investigating viscous damping using a webcam
    We describe an experiment involving a mass oscillating in a viscous fluid and analyze overdamped, critically damped and underdamped regimes of harmonic motion.

    Keywords: laboratoryunderdampedoverdampedcritically dampedharmonic motionimage processingviscous fluid

    146

    views

    46

    downloads

    0

    comments

    0

    adaptations

    The Human Microbiome Biodiversity in Health and Disease
    The students will analyze the human gut and vaginal microbiomes in healthy and diseased states using diversity of bacteria as determined by 16SrRNA sequence.
    1043

    views

    700

    downloads

    0

    comments

    0

    adaptations

    Introduction to UNIX command line
    A laboratory module for an upper-level undergraduate biology course in which students will be able to carry out simple tasks using the Unix command-line environment.

    Keywords: NIBLSEcommand lineUNIXsequence analysis

    1472

    views

    644

    downloads

    0

    comments

    0

    adaptations

    Spreadsheet Tutorial 1: Adapted to Anatomy and Physiology
    Adapted the examples to Anatomy and Physiology relevant topics and implemented in BIO165L Anatomy and Physiology I Laboratory for non-majors.

    Keywords: Resources @ HHMI - BioInteractivesummary statisticsScientific ProcessScientific Methodology

    1587

    views

    768

    downloads

    0

    comments

    0

    adaptations

    1999-Meade-Struthers-Differential Equations in the New Millennium-The Parachute Problem
    The parachute problem will be used to illustrate several essential features of the improved courses. In particular, it will be seen that the traditional version of the parachute problem is not very...

    Keywords: resistancefree fallparachutejumpskydiving

    100

    views

    42

    downloads

    0

    comments

    0

    adaptations

    Design Your Own Flow Cytometry Experiment: A Four-Week Inquiry Laboratory
    Due to its importance to the field, flow cytometry should be one of the hallmark methods a student learns in the lab portion of an undergraduate immunology course. Flow cytometry is a classic lab...

    Keywords: Immunologyexperimental designFlow cytometryMice

    3984

    views

    622

    downloads

    0

    comments

    0

    adaptations

    1-026-Evaporation-ModelingScenario
    We provide data on evaporation of 91% isopropyl alcohol in six different Petri dishes and one conical funnel and on evaporation of water in one Petri dish. We ask students to develop a...

    Keywords: evaporationconealcoholPetri dish

    307

    views

    209

    downloads

    0

    comments

    0

    adaptations

    2016-Barbarossa-Kuttler-Mathematical Modeling of Bacteria Communication in Continuous Cultures
    This paper presents a simple system of delay differential equations (DDEs) for quorum sensing of Pseudomonas putida with one positive feedback plus one (delayed) negative feedback mechanism.

    Keywords: gene regulatory networkschemostatbifurcationNumerical Simulationquorum sensing

    111

    views

    51

    downloads

    0

    comments

    0

    adaptations

    4-060-CircuitTuner-ModelingScenario
    We present essential definitions and laws for the study of simple RLC electrical circuits and build a differential equation model using these notions. We describe how such a circuit can be used to...

    Keywords: resistanceciircuittuned mass tunerfrequencyKirchhoffvoltagegainfrequency responseamplitudes Voltage LawinductancecapacitorI am currently working in redesining an existing microbiology course. I would like to be part of ed

    283

    views

    320

    downloads

    0

    comments

    0

    adaptations

    1999-Kowalczyk-Hausknecht-Using DEs To Model Real World Data
    With the increasing availability of easy to use interactive differential equation software, we convinced ourselves to completely redesign the way we teach differential equations.

    Keywords: circuitTorricelli's LawHooke's LawRC circuitharmonic oscillatorglucoseglucose tolerance test

    103

    views

    35

    downloads

    0

    comments

    0

    adaptations

    2008-Brewer-EtAl-Fitting ordinary differential equations to short time course data
    In this paper, we present a survey of existing algorithms and describe the main approaches. We also introduce and evaluate a new efficient technique for estimating ODEs linear in parameters...

    Keywords: time seriesEvaluation SPLINEgeneleast squaresbifurcation

    89

    views

    37

    downloads

    0

    comments

    0

    adaptations

    2006-Matt_MacWilliams-Developing ODEs to Describe the Motion of a Paper Helicopter
    This paper attempts to create a model that describes the motion of a paper helicopter using engineering, physical and statistical knowledge.

    Keywords: experimental designhelicopter

    129

    views

    36

    downloads

    0

    comments

    0

    adaptations

    Environmental Drivers of Ecosystem Carbon Fluxes from Minutes to Years
    Students build on fundamental concepts of ecosystem production and carbon cycling, combining this knowledge with open long-term data from ecological and meteorological networks to uncover the...

    Keywords: climate changecarbonPlant EcologyBiogeochemistryResource Typecarbon cyclingproductivitynet ecosystem productiongross primary productionecosystem respirationcarbon fluxes

    3640

    views

    1778

    downloads

    0

    comments

    0

    adaptations

    Sin Nombre Hantavirus in the US
    A module guiding students through the review of different biodiversity data sources to identify patterns in the distribution of the Sin Nombre Hantavirus in the United States. English, Spanish, and...

    Keywords: Resources @ AIM-UP!infectious diseasespublic healthnatural history collectionsWildlife Diseasedigitized natural history collectionsenglishSpanishzoonotic diseaseshantavirusMEPAPortuguesetranslated

    641

    views

    338

    downloads

    0

    comments

    0

    adaptations

    Linear Regression (Excel) and Cellular Respiration for Biology, Chemistry and Mathematics
    Students typically find linear regression analysis of data sets in a biology classroom challenging. These activities could be used in a Biology, Chemistry, Mathematics, or Statistics course. The...

    Keywords: statisticsmathematicsdata analysisdatalinear regressionbiologyonlinegraphinglinear equationsQuantitative reasoningassessmentcollege algebracellstatistical analysisregressionOERAlgebrachemistryModelscorrelationSimple Linear RegressionMicrosoft Excellab activityexperimentCellular ProcessesATPqbccUsing Excelmanipulate equationsCellular and Molecular BiologyConcepts in Statisticsoxidationline of best fitexplaining statisticsusing statisticsCellular RespirationPredictionsRespirationgraphing in ExcelLinear CorrelationExothermic Reactioncreate scatter plotAdenosine Triphosphate (ATP)germinating peasPre-lab activityStudent activityHybridCollecting DataR-squareRegression ModelFunctionDependent VariablesIndependent VariablesLinear EquationLinear Equation in two variablescreate graphcreate equationcreate regressioncreate plotinterpret regressioninterpret data

    3856

    views

    1362

    downloads

    0

    comments

    0

    adaptations

    Climate Change and Phenology: Evaluating Temperature, Precipitation, and Phenology of Frogs and Toads in Minnesota
    Students evaluate long term (100+ years) trends in temperature and precipitation, and then isolate a shorter time span (20 years) in which to evaluate the correlation between spring temps and the...

    Keywords: Resources @ ESA - TIEEclimate changephenologyamphibian

    2486

    views

    2436

    downloads

    0

    comments

    0

    adaptations

    2008-Brian_Winkel-Fourier_Series-Optimization_Opportunity
    We discuss the introduction of Fourier series as an immediate application of optimization of a function of more than one variable.

    Keywords: optimizationdiscoveryFourierFourier seris

    141

    views

    45

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search