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    Using Open-Source Bioinformatics and Visualization Tools to Explore the Structure and Function of SARS-CoV-2 Spike Protein
    The relationship between protein structure and function is a foundational concept in undergraduate biochemistry. We find this theme is best presented with assignments that encourage exploration and...

    Keywords: bioinformaticsmolecular modelingCOVID19protein structure and functionUCSF ChimeraSARS-CoV-2 spike proteinACE2 receptor

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    2004-Mitchell-von Meien-Krieger-Dalsenter-A review of recent developments in modeling of microbial growth kinetics
    Mathematical models are important tools for optimizing the design and operation of solid-state fermentation (SSF) bioreactors. Such models must describe the kinetics of microbial growth.

    Keywords: Filamentous Fungisolid-state fermentationgrowth kineticsdiffusion-reactionoxygen transfer

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    6-065-InternetPlatformUsers-ModelingScenario
    A model estimating the volume of users interacting through a two-sided Internet platform (allowing interaction of two types of users) will teach students how to analyze a 2-dimensional dynamical...

    Keywords: dynamicsflowconservedfixed pointscycletinternet platformdiverghenceJacobianattractingrepellingnodesstablesaddlespiral

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    Obesity - An Epidemic with Unexpected Causes, Consequences, and Complexity
    This dataset was collected from interviews conducted by the Centers for Disease Control and Prevention. State by state data are provided to explore the interactions of education, income, and...

    Keywords: ObesitySocioeconomic StatusFood SwampFood Desert

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    COVID-19: Molecular Basis of Infection
    This case was written in Spring 2020 during the COVID-19 pandemic. It focuses on understanding the structure and interaction of the SARS-Cov-2 viral spike protein that facilitates infection in...

    Keywords: infectionvaccinemolecular visualization and analysisCOVID19PDBSARS-CoVMolecular Case Study

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    iNaturalist Calgary Pollinators: Photographing Pollinators & Plants Guide
    The iNaturalist Calgary Pollinators: Photographing Pollinators & Plants Guide gives step by step instructions on how to add observations to a traditional project on iNaturalist, using the Calgary...

    Keywords: BiodiversityPlant-insect interactionsPhotography#iNaturalistBLUEpollinators

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    How to Create a Pollinator Project on iNaturalist
    Community science, also known as citizen science, allows any person to participate in scientific research. It breaks down the traditional barriers between scientists and the public, allowing anyone...

    Keywords: Plant EcologyPlant-insect interactions#iNaturalistpollinatorsCitizen and Community Sciencepollination ecology

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    Introduction to Assessing Biodiversity: Bivalves of the Rio Grande Area
    Learning to identify taxa is a key skill gained in many systematics classes. This module aims to introduce students to concepts and resources for identifying organisms and assessing species...

    Keywords: Biodiversityspecies distributionsdistance learninginvertebrate zoologyMuseum databases data literacyidentification

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    A CURE in traits and species distributions: Reproductive modes, range sizes, and natural history collections
    This course-based undergraduate research experience (CURE) focuses on developing hypotheses about how traits influence the range sizes of species. Topics with substantive content include symbioses,...

    Keywords: Evolutionbiostatisticsecologynatural history collectionsSymbiosisspecies distributionsherbariumplant functional traitsLichenReproductive biologyAppalachian mountains

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    1-034-T-FishMixing-ModelingScenario
    This activity gives students a chance to build the underlying differential equation and/or difference equation for a mixing problem using tangible objects (fish) and a student-designed restocking...

    Keywords: simulationfishFishingmixingrestocking

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    Biodiversity Conservation in Agriculture
    Biodiversity is decreasing rapidly each year and agriculture is a large contributor. In order to minimize biodiversity loss, we must study how local and landscape management in agriculture impact...

    Keywords: conservationagricultureBiodiversitybiodiversity conservationagricultural conservation

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    The Influence of Exotic Plant Invasion on Pollinator Abundance
    This lesson introduces two global change factors, natural habitat loss and exotic plant invasion, and analyzes how these stressors impact the biodiversity and abundance of pollinator species....

    Keywords: statisticsinvasion biologyecologyRStudioBiodiversityInvasive SpeciesPearson correlation coefficientgeneral linear modelsinvasive plantspollinatorsPopulation abundance

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    9-005-InvasiveSpeciesModel-ModelingScenario
    This scenario takes students through the development of an invasive species partial differential equation model. Basic models are discussed first, which lead students to eventually develop their...

    Keywords: Invasive Specieslogisticmigrationtraveling wavesdispersion

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    Nature’s Flying Machines: The Evolutionary Relationship of Avian Form & Function
    In this series of activities, birds will be used as the model organism. The modules examine the connections between body form and function over time by investigating the relationship between avian...

    Keywords: evolutionary ecologyCommunity Ecology

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    Digital Atlas of Ancient Life | Exploring the Diversity and History of Fossil Life
    The Digital Atlas project include field guides to fossils (including a mobile app), an online paleontology textbook, and a collection of over 500 virtual 3D models of fossil specimens.

    Keywords: Evolutionbiologyidigbiopaleontologytaxonomynatural history collectionsgeologySPNHC2020

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    Processes that Regulate Patterns of Species and Genetic Diversity - Intro Environmental Science
    This activity was adapted for use in an intro non-majors Environmental Science course, with an emphasis on collaborative data collection.

    Keywords: data analysisGenetic Driftquantitative skillsspecies diversityIsland biogeographygamificationgenetic diversityecological driftcolonizationcollaborative data collection

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    Number Sense
    In this activity, students demonstrate their own innate number sense by playing an online game that asks them to estimate quantities that are flashed on screen for only milliseconds. Research...

    Keywords: number sensemath attitudesResources @ BIOMAAP

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    Managing Prairie Dogs for Ferret Reintroduction
    This case study explores the ecological relationship between black-tailed prairie dogs and black-footed ferrets.

    Keywords: case studysocio-environmental data

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    Seed Dispersal in Tropical Forests - implementation at a small, Primarily Undergraduate Institution
    In this activity, students use data from published studies to understand patterns of seed dispersal and apply these ideas to the design of a conservation area.

    Keywords: ecologyResources @ HHMI - BioInteractivecommunityplantsdiversityScientific Process

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    Do urban yards serve as a refuge for native land snail species?
    This module contains a series of take-home activities to prepare students to analyze their own dataset collected in lab.

    Keywords: urban ecosystemsrefugia from habitat lossgroup homework

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