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    Sequence Similarity: A Quick Introduction to Bioconductor
    Following the Sequence Similarity exercises by Kleinschmit, et al., this tutorial will guide students in using the Bioconductor suite of R packages to likewise compute sequence similarity.

    Keywords: bioinformaticssequencingNIBLSEmultiple sequence alignmentsequence similarityBLOSUM scoring matrixBioconductor

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    A Little Off The Top: The Effects Of Mountiantop Removal Mining On Salamanders
    This lesson will provide an explanation of mountaintop removal mining, and potential harms associated with it. Then the lesson will move into a statistical analysis of salamanders living in streams...

    Keywords: ANOVAsalamandersalamandersmountaintopmining

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    Bioinformatics: Food Detective – a Practical Guide
    This Practical Guide in the Bringing Bioinformatics into the Classroom series introduces the idea of computers as tools to help understand aspects of biology.
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    Intro to Data Types and Graphing Lab
    This is the third lab in an Introductory Physical Geography/Environmental Studies course. It introduces students to different data types (qualitative vs quantitative), basic statistical analyses...
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    Setting Up Nonparametric Tests
    This swirl lesson will show you how to rearrange your data within R from one that shows a multiple factor design (2 x 2) to a single factor (4 levels) to allow for data analyses that require...
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    Conducting Analysis of Variance (ANOVA) in R with swirl
    This lesson offers an introduction to ANOVA, including 1) how this statistical test can be differentiated from others and 2) a step-by-step guide to conducting and interpreting ANOVA results in R,...

    Keywords: biostatisticsR programming languageSwirl

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    Ethics of Metabolic engineering
    This is an ethical reflection for students on an issue in metabolic engineering and the potential for "home-brew" morphine. The case study asks students to reflect on material in the linked...

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Ethics in synthetic genomics
    This is an ethical reflection for students on an issue in genome engineering and the synthesis of potentially infectious viruses. The case study asks students to reflect on material in the linked...

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Ethics of Gene Editing
    This is an ethical reflection for students on an issue in gene editing. The case study asks students to reflect on material in the two linked articles. Also included is the grading rubric.

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Biobyte 4 - The role of data science principles and practices in undergraduate biology
    This short activity was an effort to launch a community conversation around the interface of data science principles and practices and undergraduate biology education. A variety of resources,...

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Summer 2019 Biobytes
    This series includes the four Biobytes that were piloted at the 2019 BioQUEST / QUBES Summer Workshop titled, “Evolution of Data in the Classroom: From Data to Data Science”.

    Keywords: biostatisticsstatistical analysisavian malariaSummer Workshop 2018

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    Examining human impacts on tusk evolution in elephants using authentic research data using Serenity
    In this activity students explore and analyze real, authentic research data paired with HHMI’s “Selection for Tuskless Elephants” video in a hands-on investigation of human impacts on elephant...
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    Passion-Driven Statistics
    E-book in .pdf format and customizable .iba format

    Keywords: statisticstextbook

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    Islands as a Tool for Teaching Ecology and Evolution
    Module for Ecology & Evolution course covering island biogeography principles, The scientific process and hypothesis testing, statistical methods (t-tests, regression), and online database use...

    Keywords: moduleResources @ AIM-UP!species richnessBiodiversityIsland biogeographyAIM-UP

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    A Very Basic Tutorial for Performing Linear Mixed Effects Analyses: Tutorial 2
    The second of two tutorials that introduce you to linear and linear mixed models. This tutorial serves as a quick boot camp to jump-start your own analyses with linear mixed effects models.

    Keywords: statisticsRdata analysisgraphingconceptsstatsregressionmixed modelslinear modelsfixed effectsrandom effectsintroductionResources @ QUBES - Teaching & Referencetechnologytutorial 2boot campbeginner

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    Testing Goodness of Fit with the Chi-Square
    This is a MathBench module written for students to use in a self-study mode. It uses a narrative structure, humor, and everyday examples to step the learner through the mathematical principles...

    Keywords: Probabilitychi-squaredResources @ MathBench

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    Addressing Complex, Emergent Risks in 21st Century Natural-Human Systems
    Presentation on wicked problems in natural-human systems

    Keywords: climate changeSummer Workshop 2018environmental systemsfinancial risksystem of systems

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    DIG into Data for the Biology Classroom
    Session presentation on ecological data-centric teaching modules at the 2018 QUBES/BioQUEST Summer Workshop

    Keywords: teaching with data.DIGSummer Workshop 2018ecological datasets

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    Do urban yards serve as a refuge for native land snail species?
    This module contains a series of take-home activities to prepare students to analyze their own dataset collected in lab.

    Keywords: urban ecosystemsrefugia from habitat lossgroup homework

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    Population dynamics in simple two-species experimental microcosms
    A two-week exercise which includes homework calculations and teaching resources. Students establish brine shrimp and Platymonas algal cultures and predict final densities.

    Keywords: population dynamicsecologyspecies interactionsbotanyecosystemsfood chainpopulation regulation

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