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The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

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    Using Raw Sequence Data to Analyze Tumor Suppressor Mutations
    Learning to identify DNA sequence variants from raw sequencing data (electropherograms) is a basic molecular biology skill with applications to basic research and clinical practice. Yet learning to...

    Keywords: bioinformaticsmutationDNAgenomic visualizationparts of a geneclinical consequencesraw data

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    Doubling Time of Tumors
    This module introduces the calculation of potential doubling time of tumorous cells in the context of understanding the growth of a population of the cells. It is intended for an introductory...

    Keywords: linear regressionRatiosCell StructureOpenStaxCell Growth

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    Inexpensive Cell Migration Inquiry Lab using Zebrafish
    Cell migration is an important and interesting topic that has the potential to engage students in cell biology by its intrinsically active nature. However, most ways to investigate cell migration...

    Keywords: CytoskeletonCell migrationmodel organisms

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    1-102-CancerTumor-ModelingScenario
    This module guides students in the use of differential equation models to predict cancer growth and optimize treatment outcomes. Several classical models for cancer growth are studied, including ...

    Keywords: optimizationlogisticpredictiondata fittingpower lawGompertzcancer growtheponentialBertalanaffy

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    Building a Model of Tumorigenesis: A small group activity for a cancer biology/cell biology course
    The multistep nature of tumorigenesis is a foundational concept in the context of Cancer Biology. Many students do not appreciate the complex nature of cancer development nor do they understand how...

    Keywords: pathwayscancerMolecular AlterationsRetrospective dataTumorigenesis

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    2020-Cline_Fasteen_Francis_Sullivan_Wendt-Vision_for_Projects_Across_Mathematics_Curriculum
    We consider the use of projects in math courses as a mechanism for promoting coding, communication, and interdisciplinary application of math skills. Final projects play an important role, but we...

    Keywords: modelinginterdisciplinarywritingcodingprojecttechnical writing

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    Faculty Mentoring Networks: A Model for Promoting Teaching Scholarship in Quantitative Biology Education
    Presentation given at NABT 2016 on Faculty Mentoring Networks and teaching scholarship in quantitative biology education.

    Keywords: faculty mentoring networksquantitative biology education

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    Experiencing the Inclusive STEM Teaching Project through BioQUEST Learning Communities
    Poster presented at the NABT 2023 Conference in November 2023.

    Keywords: faculty learning communitiesInclusive teachingNABT2023

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    Experiencing the Inclusive STEM Teaching Project through BioQUEST Learning Communities
    Poster presented at the Gordon UBER Conference in June 2023

    Keywords: faculty learning communitiesInclusive teaching

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    BIOME 2022 Daily Spark: Accessibility
    Presentation on designing accessible STEM learning communities at the 2022 BIOME Institute.

    Keywords: BIOME 2022

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    Serckit - Supporting Communities in Working, Learning, and Sharing Together
    Over the last 18 years SERC at Carleton College has developed a collaborative platform for science education serving over one hundred projects, thousands of community authors and millions of annual...
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    Open QUBES - A Faculty Use Case of Open Practice
    QUBES has been a critical component of my continued success as an open scholar. This poster details several of these outcomes with my lived experience working with QUBES as an Open scholar as a...

    Keywords: QUBESopen community

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    Inclusive Pedagogy for Life Science Education Tagging Ontology
    Inclusive Pedagogy for Life Science Education Tagging Ontology

    Keywords: ontology

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    2020-Stepien_Kostelich_Kuang-Mathematics Cancer An Undergraduate Bridge Course in Applied Mathematics
    Most undergraduates have limited experience with mathematical modeling. This paper describes a course on the mathematical models of cancer growth and treatment.

    Keywords: differential equationsmodelingundergraduate educationcancertumor

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    Splicing it Together: Using Primary Data to Explore RNA Splicing and Gene Expression in Large-Lecture Introductory Biology
    At the heart of scientific ways of knowing is the systematic collection and analysis of data, which is then used to propose an explanation of how the world works. In this two-day module, students...

    Keywords: gene regulationtranscriptiongene expressioncentral dogmarepressoralternative splicingmRNA processingActivatorTranscription factors

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    BSURP Guided goal-setting workshop for undergraduate researchers
    Lesson plan, slides, and worksheet for a guided research goal-setting workshop. Designed for undergraduates in the Stanford Biology Summer Undergraduate Research Program (BSURP).

    Keywords: undergraduate researchworkshopsgoalsbioBUDS

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    Mentorship Check-In
    We provide a scaffolded discussion for research mentors and mentees to evaluate progress toward their goals, expand conceptions of mentorship, and share ideas to enhance belonging in lab.

    Keywords: Undergraduate MentorshipMentorshipFostering a Sense of Belonging

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    Guided Goal Setting for Mentors and Mentees
    We provide a framework for research mentors and mentees to talk together and explicitly discuss expectations, assumptions, and goals for each party.

    Keywords: Undergraduate Mentorshipstudent mentoring and traininggoals

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    Teaching biostatistics using the Rule of Four
    A guide to helping intro bio students develop a deeper understanding of key statistical concepts by translating among numeric, graphical, verbal, and symbolic representations.

    Keywords: statisticsbiostatisticsintroductory biologyQuantitative reasoningBIOME 2022

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    Strategic Planning for REU and Research Readiness
    Students complete a personal strategic plan, examining their strengths, vision and mission for completing an REU or research experience.

    Keywords: undergraduate researchREUstrategic planningSWOTresumepersonal statement

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