You are here: Home / Resources / Browse Resources

Open. Adaptable. Free.

Resources created by our members and partners.

The QUBES platform hosts hundreds of teaching materials, reference materials, and cloud-based software free to use and adapt using open Creative Commons licenses.

Text Search:
Applied Filters
    REMNet Tutorial, R Part 5: Normalizing Microbiome Data in R 5.2.19
    Video on normalizing microbiome data from the Research Experiences in Microbiomes Network

    Keywords: geneticsstatisticsdata analysisgraphingRStudioVideoexperimental designR programming languagemicrobiomesstudent researchinterdisciplinary educationlimnologyeco-informaticsresearch in the classroomtidyverseWorking with datasetsREMNet

    1340

    views

    451

    downloads

    0

    comments

    0

    adaptations

    REMNet Tutorial, R Part 4: Creating Taxa Plots in R 5.2.19
    Video on making taxa bar plots in R from the Research Experiences in Microbiomes Network
    1035

    views

    449

    downloads

    0

    comments

    0

    adaptations

    How Luxury and Legacy Effects Shape Urban Avifauna in Los Angeles, California
    Is L.A.’s bird population shaped by historic redlining and income inequality? This lesson will introduce luxury and legacy effects hypotheses as they relate to urban avifauna in LA neighborhoods....

    Keywords: ANCOVASimple Linear Regressionurban ecologyredliningavian ecology

    207

    views

    147

    downloads

    0

    comments

    0

    adaptations

    REMNet - A National Network for Integrating the Study of Microbiomes into Course-based Undergraduate Research Experiences (RCN-UBE Introduction)
    The mission of REMNet’s “Microbiomes for All!” is to serve as a centralized hub for information and resources on the integration of microbiome studies into the undergraduate curriculum. RemNet...

    Keywords: RCN-UBE Introduction

    792

    views

    66

    downloads

    0

    comments

    0

    adaptations

    The Human Microbiome Biodiversity in Health and Disease
    The students will analyze the human gut and vaginal microbiomes in healthy and diseased states using diversity of bacteria as determined by 16SrRNA sequence.
    1072

    views

    723

    downloads

    0

    comments

    0

    adaptations

    Team microBIOME Fall 2020 - DIY microbiome analysis
    This is our final team report for this year's BIOME Institute 2020. Learn about what we got up to and what we're planning for Spring 2021. If you want more information on REMNet go...

    Keywords: microbiomeDNA SubwayDIYREMNet microbiomesNephele

    1459

    views

    454

    downloads

    0

    comments

    0

    adaptations

    The Impact of Diet and Antibiotics on the Gut Microbiome: Distance Education Variant
    The goal of this article is to describe a variation of an active learning exercise that was previously published by the same author under a similar title. The variation describes modifications...

    Keywords: microbiomenutritionbacterial metabolitesgut bacteriahost response

    1393

    views

    179

    downloads

    0

    comments

    0

    adaptations

    REMNet: Online Resources 5.3.19
    Video on online resources for studying microbiomes from the Research Experiences in Microbiomes Network

    Keywords: VideoMicrobiology EducationmicrobiomesMicrobiome researchresearch in the classroomREMNet

    1213

    views

    405

    downloads

    0

    comments

    0

    adaptations

    Urban Ecology
    This video describes the field of urban ecology and features scientists who use the city as their field site.

    Keywords: videosecologyurban ecologyScience Forward

    950

    views

    179

    downloads

    0

    comments

    0

    adaptations

    Redlining and Climate Change
    Redlining was a racist, legal practice and its impacts are measurable in terms of environmental variables in US cities today. This resource examines redlining, urban environments, and climate change.

    Keywords: Connection to Place

    1664

    views

    1310

    downloads

    4

    comments

    1

    adaptations

    MS Excel Refresher - Lizards, iguanas, and snakes! Oh my! | Data Nuggets
    This resource, a MS Excel refresher, extends the level for this Data Nugget. Students are given an Excel workbook with the data and asked to graph and calculate diversity using Excel functions...

    Keywords: Resources @ Data NuggetsspreadsheetsRestoration EcologyUsing Excelgraphing in Excelformulas in ExcelApplied ecology

    567

    views

    302

    downloads

    0

    comments

    0

    adaptations

    Life in Urban Environments: The Impact of Urbanization on Life-History Traits in Amphibian Species
    This lesson focuses on urbanization and its negative effects on species, specifically amphibians. The lesson will also provide hands-on statistical analyses and critical thinking questions to...

    Keywords: life historyRStudiofrogstwo-way ANOVAurbanizationamphibianstoads

    1042

    views

    1179

    downloads

    0

    comments

    0

    adaptations

    Social Justice & Community Change QUBES Faculty Mentoring Network 2021
    In this Faculty Mentoring Network we will examine the historical practice of redlining, and how social and economic factors over the last century have created disparities in environmental...

    Keywords: social justiceair qualityBIOME 2020redlining

    1293

    views

    382

    downloads

    0

    comments

    0

    adaptations

    Expanding the pipeline: Engaging urban secondary school and college students in science and the environment
    This speed talk will describe three education projects that engage urban minority students in science and the environment.
    1388

    views

    422

    downloads

    0

    comments

    0

    adaptations

    The impact of diet and antibiotics on the gut microbiome
    The goal of this article is to describe an active learning exercise that can be used in a variety of advanced microbiology courses, including bacterial physiology, ecology, or systems biology. The...

    Keywords: microbiomeenvironmental controlhost responsemetabolites

    2001

    views

    226

    downloads

    0

    comments

    0

    adaptations

    Using IPAT to Measure Urban Sustainability
    Urban sustainability can be complicated to measure because sustainability means different things to different people. This challenge can be partially overcome through adoption of a guiding...

    Keywords: datasurveyurban ecosystemsUrban sustainability

    325

    views

    268

    downloads

    0

    comments

    0

    adaptations

    Do urban yards serve as a refuge for native land snail species?
    This module contains a series of take-home activities to prepare students to analyze their own dataset collected in lab.

    Keywords: urban ecosystemsrefugia from habitat lossJMP

    944

    views

    100

    downloads

    0

    comments

    0

    adaptations

    Assessing Urban Biodiversity With the eBird Citizen Science Project: A Course-Based Undergraduate Research Experience (CURE) Module
    The eBird citizen science module takes advantage of technology tools and online resources developed by the Cornell Laboratory of Ornithology (http://ebird.org) to achieve several learning...

    Keywords: datacitizen sciencecommunityBiodiversitySpecieshypothesishabitat

    3122

    views

    894

    downloads

    0

    comments

    0

    adaptations

    THE IMPORTANCE OF GREEN SPACES & NATIVE PLANTS TO URBAN AVIFAUNA: A Lesson on how urban residential yards can support birds during their annual cycle
    In this lesson students will learn about the impacts of urbanization, and the conservation challenges it poses to wildlife, in particular avifauna. Introductory ecology topics such as the theory of...

    Keywords: birdsurbanizationPoisson Distributionnative plantsGeneralized linear models

    620

    views

    452

    downloads

    0

    comments

    0

    adaptations

    Urban stream invaders: a scientist spotlight featuring Dr. Piatã Santana Marques
    Students read and interpret data from a study which addresses how urbanization affects the invasive attributes of a non-native species. They also reflect on the identity of the lead researcher and...

    Keywords: ecologyInvasive SpeciesStream ecologyurban ecologynutrient pollution

    881

    views

    656

    downloads

    0

    comments

    0

    adaptations

    Close

    Home

    Search