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A Primer for Computational Biology by Scott O'Neil

This is an Open Educational Resource written on the PressBooks platform. This textbook has great resources and concise chapters you can assign to students.

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Illumina presentation HITS 2018

Illumina presentation by Matt Angel on 6/12/2018.

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Data Carpentry

Data Carpentry develops and teaches workshops on the fundamental data skills needed to conduct research. Our mission is to provide researchers high-quality, domain-specific training covering the full lifecycle of data-driven research. Data Carpentry is a sibling organization of Software Carpentry. Where Software Carpentry teaches best practices in software development, our focus is on the introductory computational skills needed for data management and analysis in all domains of research. Our lessons are domain specific, from life and physical sciences to social science and build on the existing knowledge of learners to enable them to quickly apply skills learned to their own research. Our initial target audience is learners who have little to no prior computational experience. We create a friendly environment for learning to empower researchers and enable data driven discovery.

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Software Carpentry

Since 1998, Software Carpentry has been teaching researchers the computing skills they need to get more done in less time and with less pain. Our volunteer instructors have run hundreds of events for more than 34,000 researchers since 2012. All of our lesson materials are freely reusable under the Creative Commons - Attribution license.

The Software Carpentry Foundation and its sibling project, Data Carpentry, have merged to become The Carpentries, a fiscally sponsored project of Community Initiatives, a 501(c)3 non-profit incorporated in the United States.

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Science in the Classroom

Science in the Classroom (SitC) is a collection of freely available annotated research papers from the Science family of journals. SitC aims to help educators, undergraduates, and advanced high school students understand the research contained in scientific primary literature by using annotations and providing accompanying teaching materials. Annotations include vocabulary, methods, descriptions of prior research, and explanations of major conclusions. Each paper has an educator's guide outlining connections to science competencies within STEM learning frameworks and standards. Educator guides also provide suggested activities, discussion questions, and resources for further exploration of the subject.

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Sam S Donovan onto HITS 2018 Workshop Resources

Allen Cell Explorer

Using deep learning to illuminate cell structure

The Allen Integrated Cell unites two cutting-edge technologies to visualize and understand the organization of the major organelles and structures that comprise human induced pluripotent stem cells.

​Explore the 3D outputs of these models with our online integrated cell viewer.

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Swirl - for learning R

swirl teaches you R programming and data science interactively, at your own pace, and right in the R console!

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IF-AT: Immediate feedback Assessment Technique

 

Epstein Educational Enterprises has developed a unique multiple-choice learning and assessment system called the Immediate Feedback Assessment Technique, (“IF-AT”). The IF-AT is ideally suited for classroom assessment, textbook and test prep publishers, learning centers, as well as corporate & professional training organizations committed to providing innovative, state-of-the-art learning and teaching tools. 

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Software Carpentry

Since 1998, Software Carpentry has been teaching researchers the computing skills they need to get more done in less time and with less pain. Our volunteer instructors have run hundreds of events for more than 34,000 researchers since 2012. All of our lesson materials are freely reusable under the Creative Commons - Attribution license.

The Software Carpentry Foundation and its sibling project, Data Carpentry, have merged to become The Carpentries, a fiscally sponsored project of Community Initiatives, a 501(c)3 non-profit incorporated in the United States.

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Carlos Christopher Goller onto Data Sources

National Center for Case Studies in Science Teaching

The mission of the National Center for Case Study Teaching in Science at the University at Buffalo is to promote the development and dissemination of materials and practices for case teaching in the sciences.  Our website provides access to an award-winning collection of peer-reviewed case studies.  We offer a five-day summer workshop and a two-day fall conference to train faculty in the case method of teaching science.  In addition, we are actively engaged in educational research to assess the impact of the case method on student learning.

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Sam S Donovan onto Places to find case studies

CASES Online

What is CASES Online?

CASES Online is a collection of inquiry-based lessons to engage K-12 and undergraduate students in exploring the science behind real-world problems. Through CASES, you can transform your students into motivated investigators, self-directed and life-long learners, critical thinkers and keen problem solvers. Our cases are grounded in Problem-Based Learning (PBL), Investigative Case-Based Learning (ICBL), and related student-centered pedagogies. [more]

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Online Ethics Center

The Online Ethics Center (OEC) is a resource maintained by the Center for Engineering Ethics and Society (CEES) at the National Academy of Engineering (NAE).

Mission

The OEC mission is to

  • provide engineers, scientists, faculty, and students with resources for understanding and addressing ethically significant issues that arise in scientific and engineering practice and from the developments of science and engineering; and
  • serve those who promote learning and advance understanding of responsible research and practice in engineering and science.

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ScienceCaseNet

The Science Case Network, a newly established Research Coordination Network for Undergraduate Biology Education, centers on expanding the use of and knowledge about two effective teaching approaches: case studies and problem based learning (PBL). The Science Case Network seeks to connect case study and PBL innovators, researchers, and user groups to further the understanding of the effectiveness of these methods.


Case studies and PBL have been shown to help undergraduates develop superior skills in question formulation and data analysis while they learn as much content as with traditional methods. Using these approaches, students collaboratively analyze a scenario that presents a biological issue within a realistic setting. Students then conduct investigations and report findings.

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Sam S Donovan onto Places to find case studies

PhET Interactive Simulations

Founded in 2002 by Nobel Laureate Carl Wieman, the PhET Interactive Simulations project at the University of Colorado Boulder creates free interactive math and science simulations. PhET sims are based on extensive education research and engage students through an intuitive, game-like environment where students learn through exploration and discovery.

INTERACT, DISCOVER, LEARN!

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NCBI

As a national resource for molecular biology information, NCBI's mission is to develop new information technologies to aid in the understanding of fundamental molecular and genetic processes that control health and disease. More specifically, the NCBI has been charged with creating automated systems for storing and analyzing knowledge about molecular biology, biochemistry, and genetics; facilitating the use of such databases and software by the research and medical community; coordinating efforts to gather biotechnology information both nationally and internationally; and performing research into advanced methods of computer-based information processing for analyzing the structure and function of biologically important molecules.

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Sam S Donovan onto Data Sources

ScienceCaseNet

The Science Case Network, a newly established Research Coordination Network for Undergraduate Biology Education, centers on expanding the use of and knowledge about two effective teaching approaches: case studies and problem based learning (PBL). The Science Case Network seeks to connect case study and PBL innovators, researchers, and user groups to further the understanding of the effectiveness of these methods.


Case studies and PBL have been shown to help undergraduates develop superior skills in question formulation and data analysis while they learn as much content as with traditional methods. Using these approaches, students collaboratively analyze a scenario that presents a biological issue within a realistic setting. Students then conduct investigations and report findings.

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Sam S Donovan onto HITS 2018 Workshop Resources

PlantEd Digital Library

From Sunshine Brosi

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Vision and Change

From Sunshine Brosi

 

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MathBench Session Resources

Contains a link to the MathBench website and several papers describing the resources and their impact on student quantitative skills. There are also two handouts that list all of the modules and show which quantitative skills they target and in which courses they are typically used.

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Kaci Thompson onto Resources for Tuesday Sessions

Barriers and Opportunities For 2-Year and 4-Year STEM Degrees

National Academies Report from 2016: "Nearly 40 percent of the students entering 2- and 4-year postsecondary institutions indicated their intention to major in science, technology, engineering, and mathematics (STEM) in 2012. But the barriers to students realizing their ambitions are reflected in the fact that about half of those with the intention to earn a STEM bachelor’s degree and more than two-thirds intending to earn a STEM associate’s degree fail to earn these degrees 4 to 6 years after their initial enrollment. Many of those who do obtain a degree take longer than the advertised length of the programs, thus raising the cost of their education. Are the STEM educational pathways any less efficient than for other fields of study? How might the losses be “stemmed” and greater efficiencies realized? These questions and others are at the heart of this study."

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Kristin Jenkins onto Reports on CC STEM Education

Community Colleges in the Evolving STEM Education Landscape

This report highlights the importance of community colleges, especially in emerging areas of STEM (Science, Technology, Engineering, and Mathematics) and preparation of the STEM workforce.  Community Colleges in the Evolving STEM Education Landscape: Summary of a Summit looks at the changing and evolving relationships between community colleges and four-year institutions, with a focus on partnerships and articulation processes that can facilitate student success in STEM; expanding participation of students from historically underrepresented populations in undergraduate STEM education; and how subjects, such as mathematics, can serve as gateways or barriers to college completion.

Free PDF version available.

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Kristin Jenkins onto Reports on CC STEM Education

UDL Guidelines from CAST

These guidelines offer a set of concrete suggestions that can be applied to any discipline or domain to ensure that all learners can access and participate in meaningful, challenging learning opportunities.

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DeafTec

DeafTEC provides resources for high schools and community colleges that educate deaf and hard-of-hearing students in STEM-related programs.

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The Center for Universal Design

THE CENTER FOR UNIVERSAL DESIGN is a national research, information, and technical assistance center that evaluates, develops, and promotes accessible and universal design in housing, buildings, outdoor and urban environments and related products.

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