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  1. Investigating Trade-offs among Mammal Traits

    07 Jun 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

  2. Modeling the Mechanisms of Evolution

    25 May 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.

  3. Google Charts Example - Bubble

    18 May 2018 | Software (On-site)

    This is the "bubble" example from Joe Cheng's Google Charts package.

  4. R Shiny App Example

    09 May 2018 | Software (On-site) | Contributor(s): Drew LaMar

    This is a simple example used to demonstrate what is needed to host your R Shiny app on QUBESHub.

  5. Principles of Biology BI212, Portland State University

    28 Mar 2018 | Teaching & Reference Material | Contributor(s): Daniel J. Ballhorn

    The uploaded document is the official of the second section of Principles of Biology (BI212, Winter 2018), Portland State University

  6. Introduction to Genome Browser: What is a Gene?

    21 Feb 2018 | Teaching & Reference Material | Contributor(s): Joyce Stamm

    Genes encode information that our cells use to carry out their functions. In particular, protein-coding genes provide the cell with the information to make messenger RNAs...

  7. Original Lab Book Docs with Answer Keys

    24 Jan 2018 | Teaching & Reference Material | Contributor(s): Cory Kohn, Wendy Johnson, Amy Lark, Louise Mead, Robert T Pennock, Jim Smith, Michael James Wiser

    Here are links to Google Docs/Sheets/Forms for each of the activities and their answer keys in the Lab Book.  If you want to use any of these, including having students enter or display data, please copy the document to your Google Drive by selecting "Make a copy..." in the File...

  8. Earth Analytics in R - A Earth Data Science Course at University of Colorado, Boulder

    24 Jan 2018 | Teaching & Reference Material | Contributor(s): Leah Wasser

    Earth analytics is an advanced, multidisciplinary course that addresses major questions in Earth science and teaches students to use the analytical tools necessary to undertake exploration of heterogeneous ‘big scientific data.’Throughout the course you will use computationally...

  9. Hawk vs. Dove Game

    10 Nov 2017 | Models | Contributor(s): Drew LaMar

  10. Avida-ED

    06 Oct 2017 | Software (Off-site) | Contributor(s): Robert T Pennock, Diane Blackwood

    Avida-ED is an award-winning educational application developed at Michigan State University for undergraduate biology courses to help students learn about evolution and scientific method by allowing them to design and perform experiments to test hypotheses about evolutionary mechanisms using...

  11. Facial Bones

    29 Sep 2017 | Teaching & Reference Material | Contributor(s): Katherine Poole

    There are 14 beautiful facial bones six of them are paired and two of them are unpaired, for a grand total of 14 facial bones. The facial bones are: the unpaired mandible, the paired maxillae, the paired zygomatic bones, the paired nasal bones, the paired lacrimal bones, the paired palatine...

  12. Radiant

    16 Sep 2015 | Software (On-site)

    Business analytics using R and Shiny.

  13. Citations

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Louise Mead, James Smith, Wendy Johnson, Michael Wiser, Robert Pennock, Amy Lark

  14. Avida-ED Lab Book Summer 2017

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Wendy Johnson, Cory Kohn, Amy Lark, Louise Mead, Robert T Pennock, Jim Smith, Michael James Wiser

    The Summer 2017 version of the Avida-ED Lab Manual includes the addition of an exercise that covers genetic drift (Exercise 4: Exploring Population Change Without Selection) 

  15. IMMERSION Video

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Alondra Torres-Navarro

    A video describing Project IMMERSION. 

  16. Project IMMERSION

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Laurel Newman

  17. IMMERSION Video

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Alondra Torres-Navarro

  18. Serenity

    25 Jun 2017 | Software (On-site) | Contributor(s): Drew LaMar

    A platform-independent browser-based interface to data science tools for the classroom.

  19. Local Food Literature

    05 Jun 2017 | Teaching & Reference Material | Contributor(s): Josh Nease

  20. Web Popgen

    05 Jun 2017 | Software (Off-site) | Contributor(s): Bob Sheehy

    A Hardy-Weinberg based population genetics simulator. This program assumes a single gene and two alleles. Simulation of allele frequency changes similar to Felsenstein's Simul8 or PopG. Simulates changes in allele frequency based on violations of assumptions of Hardy-Weinberg.  A user...

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