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  1. Collecting and analyzing binomial data

    17 Jul 2020 | Software (On-site) | Contributor(s): Suann Yang, Darcy Taniguchi, Jenny Hazlehurst

    In this tool, students watch an Internet cat video, collect binomial data on cat paw usage, and graph and analyze the data with a binomial test in R using the swirl package.

  2. Swirl

    10 Jul 2020 | Software (On-site)

    Swirl: Learn R, in R

  3. Fitting of data by eye

    03 May 2020 | Software (On-site) | Contributor(s): Dmitry Kondrashov

    Allows user to select parameters to visually fit the plot of a data set

  4. Introduction to Computational Methods: Exploration of Hodgkin-Huxley Neuron Model

    20 Sep 2019 | Models | Contributor(s): Pavan Kumar Bondalapati, Srijan Bhasin

    An educational resource designed to introduce students of BIOL 325 at the College of William & Mary to differential equation based mathematical models. The Jupyter Notebook gives a brief overview of Python and its uses before giving an overview of the physiology of the neuron. It then relates...

  5. Intro to Cell Bio Cancer CURE lab at Jacksonville State University - Alabama

    20 Sep 2019 | Teaching & Reference Material | Contributor(s): Lori Hensley, JSU student project

    Example of an introductory video made by students at Jacksonville State University.  This video was intended to introduce new students to the lab/class. 

  6. Radiant Lite

    24 Jul 2019 | Software (On-site) | Contributor(s): Drew LaMar

    Stripped down version of Radiant on QUBES

  7. Serenity

    25 Jun 2017 | Software (On-site) | Contributor(s): Drew LaMar

    A platform-independent browser-based interface to data science tools for the classroom.

  8. Cats Teach Stats Binomial Test

    17 May 2019 | Software (On-site) | Contributor(s): Jenny Hazlehurst, Suann Yang, Darcy Taniguchi

    Fight stats anxiety! Students collect binary data from cute animal videos and analyze the data using a binomial test

  9. Ebola Model

    26 Apr 2019 | Software (On-site) | Contributor(s): Michael James, Lauren Mayer, Keely Copperthite

    Simple agent based SIR model of Ebola epidemics.

  10. Predator-prey models as XPP files

    12 Nov 2018 | Software (Off-site) | Contributor(s): Eli E Goldwyn

    These are the .ode files that XPP takes as input.  lv.ode is the Lotka-Volterra predator-prey model rm.ode is the Rosenzweig-MacArthur model rm3.ode is the Rosnezweig-MacArthur model but with predation following a Holling Type III functional response. The file rm.ode is...

  11. Outstanding Oaks: Quercus phenology at NEON sites

    09 Oct 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    This app visualizes data from the National Ecological Observatory Network (NEON) observations of oak phenology at three different sites.

  12. Gene Machine: The Lac Operon

    08 Sep 2018 | Software (On-site)

    Explore the effects of mutations within the lac operon by adding or removing genes from the DNA.

  13. Conference Flier

    07 Aug 2018 | Teaching & Reference Material | Contributor(s): Alycia Crall

    This resource has been updated - find the current version here: is the official conference flier. Feel free to distribute via your networks.

  14. Jupyter Lab

    13 Jul 2018 | Software (On-site) | Contributor(s): Erich Huebner

    An extensible environment for interactive and reproducible computing, based on the Jupyter Notebook and Architecture.

  15. Cultivating Your Growth Mindset

    22 Jun 2018 | Software (On-site) | Contributor(s): Kika Tuff, Jeremy M Wojdak, Arietta Fleming-Davies

    Learn what a growth mindset is and how it improves learning

  16. Investigating Trade-offs among Mammal Traits

    07 Jun 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

  17. Modeling the Mechanisms of Evolution

    25 May 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.

  18. Google Charts Example - Bubble

    18 May 2018 | Software (On-site)

    This is the "bubble" example from Joe Cheng's Google Charts package.

  19. R Shiny App Example

    09 May 2018 | Software (On-site) | Contributor(s): Drew LaMar

    This is a simple example used to demonstrate what is needed to host your R Shiny app on QUBESHub.

  20. Principles of Biology BI212, Portland State University

    28 Mar 2018 | Teaching & Reference Material | Contributor(s): Daniel J. Ballhorn

    The uploaded document is the official of the second section of Principles of Biology (BI212, Winter 2018), Portland State University