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  1. BactVsPhage

    27 Jun 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

  2. BioRadiant

    19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive statistics package using R and Shiny.

  3. Cats Teach Stats Binomial Test

    17 May 2019 | Software (On-site) | Contributor(s): Jenny Hazlehurst, Suann Yang, Darcy Taniguchi

    Fight stats anxiety! Students collect binary data from cute animal videos and analyze the data using a binomial test


    10 Feb 2015 | Software (On-site)

    COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

  5. Cultivating Your Growth Mindset

    22 Jun 2018 | Software (On-site) | Contributor(s): Kika Tuff, Jeremy M Wojdak, Arietta Fleming-Davies

    Learn what a growth mindset is and how it improves learning


    19 Oct 2015 | Software (On-site)

    DFIELD is an interactive tool that graphs a direction field for a given differential equation.

  7. Ebola Model

    26 Apr 2019 | Software (On-site) | Contributor(s): Michael James, Lauren Mayer, Keely Copperthite

    Simple agent based SIR model of Ebola epidemics.

  8. FastQC

    24 Jun 2015 | Software (On-site)

    A quality control tool for high throughput sequence data.

  9. Gene Machine: The Lac Operon

    08 Sep 2018 | Software (On-site)

    Explore the effects of mutations within the lac operon by adding or removing genes from the DNA.

  10. Google Charts Example - Bubble

    18 May 2018 | Software (On-site)

    This is the "bubble" example from Joe Cheng's Google Charts package.

  11. ImageJ

    16 Jun 2015 | Software (On-site)

    Image processing and analysis in Java.

  12. Investigating Trade-offs among Mammal Traits

    06 Jun 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

  13. IONTW

    28 Jan 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Simulates both discrete and continuous time agent-based models of infectious disease dynamics on networks.

  14. Jupyter Lab

    13 Jul 2018 | Software (On-site) | Contributor(s): Erich Huebner

    An extensible environment for interactive and reproducible computing, based on the Jupyter Notebook and Architecture.

  15. Jupyter Notebook

    05 May 2017 | Software (On-site) | Contributor(s): Martin Hunt

    Starts the Jupyter notebook server in your "notebooks" directory in your home directory.

  16. Ka-me: Voronoi Image Analyzer 1.0

    15 Jun 2015 | Software (On-site) | Contributor(s): John R Jungck

    Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern.

  17. Mesquite

    18 Jun 2015 | Software (On-site)

    A modular system for evolutionary analysis

  18. Modeling the Mechanisms of Evolution

    25 May 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.

  19. NetLogo

    23 Jan 2015 | Software (On-site)

    Multi-agent Programmable Modeling Environment

  20. OpenRefine

    18 Jan 2016 | Software (On-site)

    OpenRefine (formerly Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.