BactVsPhage

27 Jun 2015 | Software (On-site) | Contributor(s): Drew LaMar

Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

BioRadiant

19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

Interactive statistics package using R and Shiny.

Cats Teach Stats Binomial Test

17 May 2019 | Software (On-site) | Contributor(s): Jenny Hazlehurst, Suann Yang, Darcy Taniguchi

Fight stats anxiety! Students collect binary data from cute animal videos and analyze the data using a binomial test

Collecting and analyzing binomial data

15 Jul 2020 | Software (On-site) | Contributor(s): Suann Yang, Darcy Taniguchi, Jenny Hazlehurst

In this tool, students watch an Internet cat video, collect binomial data on cat paw usage, and graph and analyze the data with a binomial test in R using the swirl package.

COPASI

10 Feb 2015 | Software (On-site)

COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

Cultivating Your Growth Mindset

22 Jun 2018 | Software (On-site) | Contributor(s): Kika Tuff, Jeremy M Wojdak, Arietta Fleming-Davies

Learn what a growth mindset is and how it improves learning

DFIELD

19 Oct 2015 | Software (On-site)

DFIELD is an interactive tool that graphs a direction field for a given differential equation.

Ebola Model

26 Apr 2019 | Software (On-site) | Contributor(s): Michael James, Lauren Mayer, Keely Copperthite

Simple agent based SIR model of Ebola epidemics.

FastQC

24 Jun 2015 | Software (On-site)

A quality control tool for high throughput sequence data.

Fitting of data by eye

30 Apr 2020 | Software (On-site) | Contributor(s): Dmitry Kondrashov

Allows user to select parameters to visually fit the plot of a data set

Gene Machine: The Lac Operon

08 Sep 2018 | Software (On-site)

Explore the effects of mutations within the lac operon by adding or removing genes from the DNA.

Google Charts Example - Bubble

18 May 2018 | Software (On-site)

This is the "bubble" example from Joe Cheng's Google Charts package.

ImageJ

16 Jun 2015 | Software (On-site)

Image processing and analysis in Java.

Investigating Trade-offs among Mammal Traits

06 Jun 2018 | Software (On-site) | Contributor(s): Jackie Matthes

This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

IONTW

28 Jan 2015 | Software (On-site) | Contributor(s): Drew LaMar

Simulates both discrete and continuous time agent-based models of infectious disease dynamics on networks.

Jupyter Lab

13 Jul 2018 | Software (On-site) | Contributor(s): Erich Huebner

An extensible environment for interactive and reproducible computing, based on the Jupyter Notebook and Architecture.

Jupyter Notebook

05 May 2017 | Software (On-site) | Contributor(s): Martin Hunt

Starts the Jupyter notebook server in your "notebooks" directory in your home directory.

Ka-me: Voronoi Image Analyzer 1.0

15 Jun 2015 | Software (On-site) | Contributor(s): John R Jungck

Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern.

Mesquite

18 Jun 2015 | Software (On-site)

A modular system for evolutionary analysis

Modeling the Mechanisms of Evolution

25 May 2018 | Software (On-site) | Contributor(s): Jackie Matthes

Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.