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  1. Disease Spread Simulation with M&M's and Information on the wider SIMIODE community

    0.0 out of 5 stars 

    03 Jul 2015 | Teaching & Reference Material | Contributor(s): Brian Winkel

    This resource has been updated - find the current version here: https://qubeshub.org/publications/358This is a Student Version of a Modeling Scenario from the community, SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations at...

  2. Disease Spread Simulation with M&M's and Information on the wider SIMIODE community

    0.0 out of 5 stars 

    03 Jul 2015 | Teaching & Reference Material | Contributor(s): Brian Winkel

    This resource has been updated - find the current version here: https://qubeshub.org/publications/358This is a Student Version of a Modeling Scenario from the community, SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations at...

  3. Discrete Math Modeling with Biological Applications (Course Materials)

    5.0 out of 5 stars 

    29 Jun 2015 | Teaching & Reference Material | Contributor(s): Erin N. Bodine

    This resource has updated versions:Version 1.0 (2018) https://qubeshub.org/qubesresources/publications/749/1Version 2.0 (2019) https://qubeshub.org/qubesresources/publications/749/2 -- This version no longer has the Agent-Based Modeling materialsThese are the...

  4. BactVsPhage

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    27 Jun 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

  5. Effects of Laptop Use on Student Learning

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    19 Jun 2015 | Teaching & Reference Material | Contributor(s): Tony Weisstein

    This resource has been updated - find the current version here: https://qubeshub.org/publications/312Verbal and graphical/quantitative data from two studies of how laptop use affects student learning. I show and discuss these slides at the start of each semester to explain my no-laptop...

  6. The Tree of Life

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    19 Jun 2015 | Teaching & Reference Material | Contributor(s): Arietta Fleming-Davies, Julie Morris, Sarah Orlofske, Ellen Wisner

         Transforming the "parade of phyla" into an integrated curriculum emphasizing evolutionary concepts, tree-thinking, and quantitative reasoning skills Our goal is to create an integrated curriculum that emphasizes evolutionary concepts, tree-thinking,...

  7. Joel E. Greengiant Learns About Peas: From Nucleotides to Selection

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    17 Jun 2015 | Teaching & Reference Material | Contributor(s): Merle Heidemann, Peter J.T. White, Jim Smith

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/845This case study follows purveyors of peas, Joel E. and Jolene Greengiant, as they learn about the origin, biochemistry, genetics and eventual artificial selection of sweet...

  8. The Evolution of Color Vision in Monkeys: From Nucleotides to Ecology

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    16 Jun 2015 | Teaching & Reference Material | Contributor(s): Merle Heidemann, Peter J.T. White, Jim Smith

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/843This case study examines the evolution color vision in Old World and New World monkeys from multiple biological perspectives. This integrative approach employs both...

  9. Avida-ED presentation: Context Dependent Fitness

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    07 Jun 2015 | Teaching & Reference Material | Contributor(s): Maren L Friesen, Andrew M Jarosz

    Avida-ED exercise showing adaptation to contrasting resource environments illustrating that the fitness of different genotypes depends on the environment.

  10. A Quick Guide to Teaching R Programming to Computational Biology Students

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    03 Jun 2015 | Teaching & Reference Material | Contributor(s): Stephen Eglen

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/838An introduction from an experienced educator in teaching R to computational biology graduate students. Contains information that is relevant for the undergraduate classroom...

  11. Exploring generic scale-free networks

    0.0 out of 5 stars 

    02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    This module is a companion module to Module [[Resource(384)]]. Here we study in more detail networks that are generic for a given network size and a given exponent of a power-law degree distribution. We explore predicted structural properties of such networks both mathematically and with...

  12. Clustering coefficients

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    02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender, Drew LaMar

    In this module we introduce several definitions of so-called clustering coefficients. A motivating example shows how these characteristics of the contact network may influence the spread of an infectious disease. In later sections we explore, both with the help of IONTW and theoretically,...

  13. Small-world models

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    02 Jun 2015 | Teaching & Reference Material | Contributor(s): Winfried Just, Hannah Lea Callender

    Small-world networks are classes of networks that have both the small-world property and exhibit strong clustering. Two constructions of such networks are implemented in IONTW. Here we study, both theoretically and with simulation experiments, the structure of these networks and how it influences...

  14. BioRadiant

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    19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive statistics package using R and Shiny.

  15. BioRadiant

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    19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive statistics package using R and Shiny.

  16. Statistical Power for One-Sample t-Test

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    18 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive visualization of statistical power for a one-sample t-test.

  17. Statistical Power for One-Sample t-Test

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    18 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive visualization of statistical power for a one-sample t-test.

  18. R for biologists

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    18 May 2015 | Teaching & Reference Material | Contributor(s): Marco Martinez

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/815An introductory guide to data analysis in R for life sciences researchers.

  19. ModelSim Population Biology Unit

    0.0 out of 5 stars 

    18 May 2015 | Teaching & Reference Material

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/902This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology....

  20. ModelSim Population Biology Unit

    0.0 out of 5 stars 

    18 May 2015 | Teaching & Reference Material

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/902This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology....

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