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  1. A Quick Guide to Teaching R Programming to Computational Biology Students

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    03 Jun 2015 | Teaching & Reference Material | Contributor(s): Stephen Eglen

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/838An introduction from an experienced educator in teaching R to computational biology graduate students. Contains information that is relevant for the undergraduate classroom...

  2. A very basic tutorial for performing linear mixed effects analyses: Tutorial 2

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    24 Apr 2015 | Teaching & Reference Material | Contributor(s): Bodo Winter

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/833This tutorial serves as a quick boot camp to jump-start your own analyses with linear mixed effects models. This text is different from other introductions by being decidedly...

  3. A Walk Through the Woods

    4.0 out of 5 stars 

    09 Jul 2015 | Teaching & Reference Material | Contributor(s): Jerome Chave, David Coomes, Steven Jansen, Simon L. Lewis, Nathan G. Swenson, Amy E. Zanne, Gaby Lopez-gonzales, J Illic, RB Miller, MC Wiemann, Samantha Swauger

    This resource has been updated - find the current version here: https://qubeshub.org/publications/274/Wood density data used in this activity are derived from: Zanne AE, Lopez-Gonzalez G, Coomes DA, Ilic J, Jansen S, Lewis SL, Miller RB, Swenson NG, Wiemann MC, Chave J (2009) Data from:...

  4. Avida-ED

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    06 Oct 2017 | Software (Off-site) | Contributor(s): Robert T Pennock, Diane Blackwood

         This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/874Avida-ED is an award-winning educational application developed at Michigan State University...

  5. Avida-ED Lab Book Summer 2017

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    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Wendy Johnson, Cory Kohn, Amy Lark, Louise Mead, Robert T Pennock, Jim Smith, Michael James Wiser

    The Summer 2017 version of the Avida-ED Lab Manual includes the addition of an exercise that covers genetic drift (Exercise 4: Exploring Population Change Without Selection) 

  6. Avida-ED Lab Book Summer 2017

    0.0 out of 5 stars 

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Wendy Johnson, Cory Kohn, Amy Lark, Louise Mead, Robert T Pennock, Jim Smith, Michael James Wiser

    The Summer 2017 version of the Avida-ED Lab Manual includes the addition of an exercise that covers genetic drift (Exercise 4: Exploring Population Change Without Selection) 

  7. Avida-ED User Manual

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    07 Jun 2015 | Teaching & Reference Material | Contributor(s): Diane Blackwood

    Basic User manual to use Avida-ED

  8. BioQUEST: Visual Datasets

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    13 Mar 2015 | Teaching & Reference Material | Contributor(s): Ethel Stanley

    This resource has been updated - find the current version here: https://qubeshub.org/publications/345This downloadable module features imaginary animals and plants, and is meant to aid students in thinking about questions of evolution, classification, and phylogeny. 

  9. BioRadiant

    0.0 out of 5 stars 

    19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive statistics package using R and Shiny.

  10. Citations

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    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Louise Mead, James Smith, Wendy Johnson, Michael Wiser, Robert Pennock, Amy Lark

    We present an inquiry-based curriculum based on the digital evolution platform Avida-ED (http://avida-ed.msu.edu). We designed an instructional sequence and lab book consisting of an introduction to Avida-ED and a set of three lessons focused on specific evolutionary concepts. These served to...

  11. Collecting and analyzing binomial data

    0.0 out of 5 stars 

    17 Jul 2020 | Software (On-site) | Contributor(s): Suann Yang, Darcy Taniguchi, Jenny Hazlehurst

    In this tool, students watch an Internet cat video, collect binomial data on cat paw usage, and graph and analyze the data with a binomial test in R using the swirl package.

  12. Cookbook for R

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    10 Jan 2015 | Teaching & Reference Material | Contributor(s): Winston Chang

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/780The goal of the cookbook is to provide solutions to common tasks and problems in analyzing data.

  13. Course materials for computational genomics using R

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    19 Nov 2015 | Teaching & Reference Material | Contributor(s): Hong Qin

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/907The R code and data are deposited at Github: https://github.com/hongqin/RCompBio 

  14. Data Analysis for the Life Sciences

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    25 Sep 2015 | Teaching & Reference Material | Contributor(s): Rafael A Irizarry, Michael I Love

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/841An online stats book written completely in R!From the authors:"Data analysis is now part of practically every research project in the life sciences. In this...

  15. Data Nuggets - Bringing Real Data into the Classroom to Unearth Students' Quantitative & Inquiry Skills

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    22 Jan 2015 | Teaching & Reference Material | Contributor(s): MK Kjelvik, EH Schultheis

    Data Nuggets are narratives about real research, featuring the principal scientist, that include data students can analyze.   Right now they are aimed at K-12 students, but many topics covered are taught in college courses, and there is no limit to what mathematical or statistical concepts...

  16. DataCamp

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    06 Nov 2016 | Teaching & Reference Material | Contributor(s): Drew LaMar

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/913The Easiest Way to Learn Data Science OnlineMaster data analysis from the comfort of your browser, at your own pace, tailored to your needs and expertise. Whether...

  17. Ecology and Epidemiology in R

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    09 May 2015 | Teaching & Reference Material

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/837

  18. Free Introduction to R Course at DataCamp

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    06 Nov 2016 | Teaching & Reference Material | Contributor(s): Drew LaMar

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/914In this introduction to R, you will master the basics of this beautiful open source language, including factors, lists and data frames. With the knowledge gained in this...

  19. Google Charts Example - Bubble

    0.0 out of 5 stars 

    18 May 2018 | Software (On-site)

    This is the "bubble" example from Joe Cheng's Google Charts package.

  20. Investigating Trade-offs among Mammal Traits

    5.0 out of 5 stars 

    07 Jun 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

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