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  1. Swirl

    0.0 out of 5 stars 

    10 Jul 2020 | Software (On-site)

    Swirl: Learn R, in R

  2. Radiant Lite

    0.0 out of 5 stars 

    24 Jul 2019 | Software (On-site) | Contributor(s): Drew LaMar

    Stripped down version of Radiant on QUBES

  3. Outstanding Oaks: Quercus phenology at NEON sites

    0.0 out of 5 stars 

    09 Oct 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    This app visualizes data from the National Ecological Observatory Network (NEON) observations of oak phenology at three different sites.

  4. Investigating Trade-offs among Mammal Traits

    5.0 out of 5 stars 

    07 Jun 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

  5. Modeling the Mechanisms of Evolution

    0.0 out of 5 stars 

    25 May 2018 | Software (On-site) | Contributor(s): Jackie Matthes

    Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.

  6. Introduction to Genome Browser: What is a Gene?

    0.0 out of 5 stars 

    21 Feb 2018 | Teaching & Reference Material | Contributor(s): Joyce Stamm

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/850 Genes encode information that our cells use to carry out their functions. In particular,...

  7. Avida-ED

    0.0 out of 5 stars 

    06 Oct 2017 | Software (Off-site) | Contributor(s): Robert T Pennock, Diane Blackwood

         This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/874Avida-ED is an award-winning educational application developed at Michigan State University...

  8. Radiant

    0.0 out of 5 stars 

    16 Sep 2015 | Software (On-site)

    Business analytics using R and Shiny.

  9. Citations

    0.0 out of 5 stars 

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Louise Mead, James Smith, Wendy Johnson, Michael Wiser, Robert Pennock, Amy Lark

    We present an inquiry-based curriculum based on the digital evolution platform Avida-ED (http://avida-ed.msu.edu). We designed an instructional sequence and lab book consisting of an introduction to Avida-ED and a set of three lessons focused on specific evolutionary concepts. These served to...

  10. Avida-ED Lab Book Summer 2017

    0.0 out of 5 stars 

    27 Jul 2017 | Teaching & Reference Material | Contributor(s): Wendy Johnson, Cory Kohn, Amy Lark, Louise Mead, Robert T Pennock, Jim Smith, Michael James Wiser

    The Summer 2017 version of the Avida-ED Lab Manual includes the addition of an exercise that covers genetic drift (Exercise 4: Exploring Population Change Without Selection) 

  11. DataCamp

    0.0 out of 5 stars 

    06 Nov 2016 | Teaching & Reference Material | Contributor(s): Drew LaMar

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/913The Easiest Way to Learn Data Science OnlineMaster data analysis from the comfort of your browser, at your own pace, tailored to your needs and expertise. Whether...

  12. 50 years of Data Science

    0.0 out of 5 stars 

    23 Feb 2016 | Teaching & Reference Material | Contributor(s): David Donoho

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/912More than 50 years ago, John Tukey called for a reformation of academic statistics. In ‘The Future of Data Analysis’, he pointed to the existence of an as-yet...

  13. Modernizing Statistics Education via Biology Applications

    0.0 out of 5 stars 

    21 Oct 2015 | Teaching & Reference Material | Contributor(s): Olcay Akman

    This resource has been updated - find the current version here: https://qubeshub.org/publications/254In most traditional statistics courses, instructors use data from different fields in an effort to give the courses an interdisciplinary flavor. They generally fail because these attempts...

  14. Modernizing Statistics Education via Biology Applications

    0.0 out of 5 stars 

    21 Oct 2015 | Teaching & Reference Material | Contributor(s): Olcay Akman

    This resource has been updated - find the current version here: https://qubeshub.org/publications/254In most traditional statistics courses, instructors use data from different fields in an effort to give the courses an interdisciplinary flavor. They generally fail because these attempts...

  15. Population Genetics: When Darwin Met Mendel - Crash Course Biology

    3.5 out of 5 stars 

    03 Oct 2015 | Teaching & Reference Material | Contributor(s): CrashCourse

    This Youtube video talks about population genetics, which helps to explain the evolution of populations over time by combing the principles of Mendel and Darwin, and by means of the Hardy-Weinberg equation, all in an upbeat, modern and somewhat zany manner.

  16. Using Evolutionary Data in Developing Phylogenetic Trees: A Scaffolded Approach with Authentic Data

    0.0 out of 5 stars 

    01 Oct 2015 | Teaching & Reference Material | Contributor(s): Kd Davenport, Kirsten Jane Milks, Rebecca Van Tassell

    Analyzing evolutionary relationships requires that students have a thorough understanding of evidence and of how scientists use evidence to develop these relationships. In this lesson sequence, students work in groups to process many different lines of evidence of evolutionary relationships...

  17. A Laboratory Class Exploring Microbial Diversity and Evolution Using Online Databases, the Biology Workbench, and Phylogenetics Software

    0.0 out of 5 stars 

    29 Sep 2015 | Teaching & Reference Material | Contributor(s): Sarah Boomer, Kelly Shipley, Bryan Dutton, Daniel Lodge

    Students assemble and align bacterial datasets using DNA information downloaded from the National Center for Biotechnology Information website and Biology Workbench.  Specifically, they compare unknown original DNA sequences (from, in our case, hot spring communities) to a backbone of...

  18. HHMI Teacher Guide: Math and Statistics

    0.0 out of 5 stars 

    23 Sep 2015 | Teaching & Reference Material | Contributor(s): Paul Strode, Ann Brokaw

    This resource has been updated - find the current version here: https://qubeshub.org/publications/342Topics include measures of average (mean, median, and mode), variability (range and standard deviation), uncertainty (standard error and 95% confidence interval), Chi-square analysis, student...

  19. R Commander

    0.0 out of 5 stars 

    04 Sep 2015 | Software (On-site) | Contributor(s): Drew LaMar

    R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that is easy and intuitive to use.

  20. QUBES: a community focused on supporting teaching and learning in quantitative biology

    0.0 out of 5 stars 

    30 Jul 2015 | Teaching & Reference Material | Contributor(s): Sam S Donovan, Carrie Diaz Eaton, Tom Gower, Kristin Jenkins, Drew LaMar, DorothyBelle Poli, Bob Sheehy, Jeremy M Wojdak

    This resource has been updated - find the current version here: https://qubeshub.org/publications/226This letter provides an overview of the Quantitative Undergraduate Biology Education and Synthesis (QUBES) Project funded through the National Science Foundation. The project has five...

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