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Collecting and analyzing binomial data
17 Jul 2020 | Software (On-site) | Contributor(s): Suann Yang, Darcy Taniguchi, Jenny Hazlehurst
In this tool, students watch an Internet cat video, collect binomial data on cat paw usage, and graph and analyze the data with a binomial test in R using the swirl package.
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Swirl
10 Jul 2020 | Software (On-site)
Swirl: Learn R, in R
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Radiant Lite
24 Jul 2019 | Software (On-site) | Contributor(s): Drew LaMar
Stripped down version of Radiant on QUBES
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Outstanding Oaks: Quercus phenology at NEON sites
09 Oct 2018 | Software (On-site) | Contributor(s): Jackie Matthes
This app visualizes data from the National Ecological Observatory Network (NEON) observations of oak phenology at three different sites.
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Investigating Trade-offs among Mammal Traits
07 Jun 2018 | Software (On-site) | Contributor(s): Jackie Matthes
This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.
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Modeling the Mechanisms of Evolution
25 May 2018 | Software (On-site) | Contributor(s): Jackie Matthes
Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.
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Modeling the Mechanisms of Evolution
25 May 2018 | Software (On-site) | Contributor(s): Jackie Matthes
Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.
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Google Charts Example - Bubble
18 May 2018 | Software (On-site)
This is the "bubble" example from Joe Cheng's Google Charts package.
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R Shiny App Example
09 May 2018 | Software (On-site) | Contributor(s): Drew LaMar
This is a simple example used to demonstrate what is needed to host your R Shiny app on QUBESHub.
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Principles of Biology BI212, Portland State University
28 Mar 2018 | Teaching & Reference Material | Contributor(s): Daniel J. Ballhorn
The uploaded document is the official of the second section of Principles of Biology (BI212, Winter 2018), Portland State University
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Introduction to Genome Browser: What is a Gene?
21 Feb 2018 | Teaching & Reference Material | Contributor(s): Joyce Stamm
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/850 Genes encode information that our cells use to carry out their functions. In particular,...
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Introduction to Genome Browser: What is a Gene?
21 Feb 2018 | Teaching & Reference Material | Contributor(s): Joyce Stamm
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/850 Genes encode information that our cells use to carry out their functions. In particular,...
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Avida-ED
06 Oct 2017 | Software (Off-site) | Contributor(s): Robert T Pennock, Diane Blackwood
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/874Avida-ED is an award-winning educational application developed at Michigan State University...
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Radiant
16 Sep 2015 | Software (On-site)
Business analytics using R and Shiny.
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Citations
27 Jul 2017 | Teaching & Reference Material | Contributor(s): Louise Mead, James Smith, Wendy Johnson, Michael Wiser, Robert Pennock, Amy Lark
We present an inquiry-based curriculum based on the digital evolution platform Avida-ED (http://avida-ed.msu.edu). We designed an instructional sequence and lab book consisting of an introduction to Avida-ED and a set of three lessons focused on specific evolutionary concepts. These served to...
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Citations
27 Jul 2017 | Teaching & Reference Material | Contributor(s): Louise Mead, James Smith, Wendy Johnson, Michael Wiser, Robert Pennock, Amy Lark
We present an inquiry-based curriculum based on the digital evolution platform Avida-ED (http://avida-ed.msu.edu). We designed an instructional sequence and lab book consisting of an introduction to Avida-ED and a set of three lessons focused on specific evolutionary concepts. These served to...
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Avida-ED Lab Book Summer 2017
27 Jul 2017 | Teaching & Reference Material | Contributor(s): Wendy Johnson, Cory Kohn, Amy Lark, Louise Mead, Robert T Pennock, Jim Smith, Michael James Wiser
The Summer 2017 version of the Avida-ED Lab Manual includes the addition of an exercise that covers genetic drift (Exercise 4: Exploring Population Change Without Selection)
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Avida-ED Lab Book Summer 2017
27 Jul 2017 | Teaching & Reference Material | Contributor(s): Wendy Johnson, Cory Kohn, Amy Lark, Louise Mead, Robert T Pennock, Jim Smith, Michael James Wiser
The Summer 2017 version of the Avida-ED Lab Manual includes the addition of an exercise that covers genetic drift (Exercise 4: Exploring Population Change Without Selection)
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Pokemon Go and Ecology
17 Feb 2017 | Teaching & Reference Material | Contributor(s): Elizabeth C Davis-Berg, Joshua Drew, Stephanie Sardelis <stephanie.sardelis@gmail.com>
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/787These are resources associated with using Pokemon Go to teach concepts in Ecology. They can be used from Introductory non-majors classes up through graduate classes.
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Mathematical models and theorems
01 Feb 2017 | Teaching & Reference Material | Contributor(s): Winfried Just
In this module we introduce and compare various types of deterministic and stochastic mathematical models of disease transmission. We then illustrate how one can derive predictions of these models in the form of mathematical theorems.Level: Advanced undergraduate and graduate students of...