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Performing a Population Viability Analysis from Data Students Collect on a Local Plant
23 Sep 2015 | Teaching & Reference Material | Contributor(s): Noah Chamey, Sydne Record
This resource has been updated - find the current version here: https://qubeshub.org/publications/264During two lab periods, students collect demographic data on perennial plants and then use these data in a matrix model to perform population viability analyses. During the first lab,...
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R Commander
04 Sep 2015 | Software (On-site) | Contributor(s): Drew LaMar
R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that is easy and intuitive to use.
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R Reference Card
02 Sep 2015 | Teaching & Reference Material | Contributor(s): Tom Short
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/840by Tom Short, EPRI PEAC, tshort@epri-peac.com 2004-11-07Granted to the public domain. See www.Rpad.org for the source and latest version. Includes material from R...
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R Shiny Basics
17 Aug 2015 | Teaching & Reference Material | Contributor(s): Claire K. Lunch, Christine M. Laney
A nice introduction to building apps with R Shiny. Written by the folks at NEON (National Ecological Observatory Network).
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Rstudio cheatsheets
17 Aug 2015 | Teaching & Reference Material
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/839Cheatsheets are quickstart guides to using some of the most popular packages and features of Rstudio. This link will direct you to the following cheatsheets:Shiny...
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Joel E. Greengiant Learns About Peas: From Nucleotides to Selection
17 Jun 2015 | Teaching & Reference Material | Contributor(s): Merle Heidemann, Peter J.T. White, Jim Smith
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/845This case study follows purveyors of peas, Joel E. and Jolene Greengiant, as they learn about the origin, biochemistry, genetics and eventual artificial selection of sweet...
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A Quick Guide to Teaching R Programming to Computational Biology Students
03 Jun 2015 | Teaching & Reference Material | Contributor(s): Stephen Eglen
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/838An introduction from an experienced educator in teaching R to computational biology graduate students. Contains information that is relevant for the undergraduate classroom...
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BioRadiant
19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar
Interactive statistics package using R and Shiny.
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Statistical Power for One-Sample t-Test
18 May 2015 | Software (On-site) | Contributor(s): Drew LaMar
Interactive visualization of statistical power for a one-sample t-test.
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R for biologists
18 May 2015 | Teaching & Reference Material | Contributor(s): Marco Martinez
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/815An introductory guide to data analysis in R for life sciences researchers.
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Ecology and Epidemiology in R
09 May 2015 | Teaching & Reference Material
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/837
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A very basic tutorial for performing linear mixed effects analyses: Tutorial 2
24 Apr 2015 | Teaching & Reference Material | Contributor(s): Bodo Winter
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/833This tutorial serves as a quick boot camp to jump-start your own analyses with linear mixed effects models. This text is different from other introductions by being decidedly...
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Linear models and linear mixed effects models in R: Tutorial 1
24 Apr 2015 | Teaching & Reference Material | Contributor(s): Bodo Winter
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/832Linear models and linear mixed models are an impressively powerful and flexible tool for understanding the world. This tutorial is the first of two tutorials that introduce...
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Molecular Biology of the Cell (MBoC)
27 Mar 2015 | Teaching & Reference Material
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/851An online journal focusing upon generally-applicable studies of cell biology. From the journal: MBoC publishes research articles and essays that report...
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RStudio IDE for R
22 Jan 2015 | Software (On-site)
RStudio is a GUI for R, the statistical programming language.
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Chi-Square analysis of two point test cross data
21 Jan 2015 | Teaching & Reference Material | Contributor(s): Bob Sheehy
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/746This flash tutorial simulates analysis of a 2 point test cross and will walk you through the analysis of two hypothetical traits. Your goal is to determine if these traits...
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IPMpack: an R package for Integral Projection Models
19 Jan 2015 | Software (Off-site) | Contributor(s): C. Jessica E. Metcalf, Sean M. McMahon, Roberto Salguero-Gómez, Eelke Jongejans, Cory Merow
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/779IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models. An IPM is a demographic tool to explore the...
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Ch 11 Genetics and Statistics (Chi Square)
19 Jan 2015 | Teaching & Reference Material | Contributor(s): Shannan Muskopf
A PowerPoint slideshow which informs the viewer of the purposes of chi square. The PowerPoint includes definitions of relevant terms, step-by-step procedures for calculating chi square, and questions for individual thoughts. The slides support one example...
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Human Genetic Variation: A Flipped Exercise in Cultural Competency
15 Jan 2015 | Teaching & Reference Material | Contributor(s): Shoumita Dasgupta, Katherine Larabee Tuttle
"This interactive case discussion was created to emphasize the clinical relevance of population genetics, but is also a suitable resource for teaching the basic principles of population genetics while relating them to human genetic variation. Our understanding of human genetic variation has...
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ABO Blood Group Frequencies
14 Jan 2015 | Software (Off-site) | Contributor(s): John R. Jungck, Jennifer A. Spangenberg
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/756An Excel workbook in which students can calculate blood type frequencies through different approaches (Hardy-Weinberg, quadratic formula, and the EM algorithm). The...