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1. Teaching Population Dynamics with Data and HHMI BioInteractive

   16 Nov 2019 | Teaching Materials | Contributor(s):

   By Abby Kula¹, Kristine Grayson²

   1. Mount St. Mary’s University 2. University of Richmond

   Presented at NABT 2019, we demonstrate how the Population Dynamics Click & Learn resource can be customized for any organism - using the Lionfish invasion as an example

   https://qubeshub.org/qubesresources/publications/1474/?v=1

2. A Curious Display

   28 Oct 2019 | Teaching Materials | Contributor(s):

   By Margaret Waterman¹, Brandon Call, Sandi Connelly², Kristin Jenkins³, Sam Catherine Johnston⁴, Vedham Karpakakunjaram⁵, Viet Le⁶, Hayley Orndorf⁷, Melissa Skyer⁸, Barbara Spiecker⁹

   1. Southeast Missouri State University 2. Rochester Institute Of Technology 3. BioQUEST 4. CAST Inc. 5. Montgomery College 6. Rochester Institute of Technology 7. University of Pittsburgh 8. National Technical Institute for the Deaf at Rochester Institute of Technology 9. Oregon State University

   Case study on genetically modified organisms

   https://qubeshub.org/qubesresources/publications/1452/?v=1

3. Gelin’: Gel Electrophoresis Simulation

   24 Oct 2019 | Teaching Materials | Contributor(s):

   By Beyond Benign

   Students will understand how DNA is separated into a fingerprint by using a chromatography activity to simulate gel electrophoresis.

   https://qubeshub.org/qubesresources/publications/1448/?v=1

4. Lesson III - Annotation

   23 Oct 2019 | Teaching Materials | Contributor(s):

   By Gaurav Arora

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

   https://qubeshub.org/qubesresources/publications/1433/?v=1

5. Lesson III - Annotation

   23 Oct 2019 | Teaching Materials | Contributor(s):

   By Gaurav Arora

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

   https://qubeshub.org/qubesresources/publications/1432/?v=1

6. Lesson V - Phylogenetics

   22 Oct 2019 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson V is an introduction to Phylogenetics.

   https://qubeshub.org/qubesresources/publications/858/?v=2

7. Lesson IV - Comparative Genomics

   10 Oct 2019 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson IV, Comparative Genomics, discusses some of the tools...

   https://qubeshub.org/qubesresources/publications/857/?v=2

8. Lesson III - Annotation

   10 Oct 2019 | Teaching Materials | Contributor(s):

   By Anne Rosenwald¹, Gaurav Arora², Vinayak Mathur³

   1. Georgetown University 2. Gallaudet University 3. Cabrini University

   Genome Solver began as a way to teach undergraduate faculty some basic skills in bioinformatics; no coding or scripting is required. Lesson III introduces Annotation, or assigning meaning to all...

   https://qubeshub.org/qubesresources/publications/856/?v=2

9. Optimal Foraging in Swirl

   08 Oct 2019 | Teaching Materials | Contributor(s):

   By Mary Elizabeth McWhirt¹, Emily Weigel¹

   Georgia Institute of Technology

   This lesson centers around the marginal value theorem (MVT, Charnov 1976), which describes how animals should forage in patches. It serves as a pre-lab to teach MVT basics, vectors, ANOVA, and...

   https://qubeshub.org/qubesresources/publications/1213/?v=2

10. Modeling the lac Operon to Understand the Regulation of Gene Expression in Prokaryotes

    27 Sep 2019 | Teaching Materials | Contributor(s):

    By Sam S Donovan

    University of Pittsburgh

    This resource is a recitation activity designed for an introductory biology course in which students explore a lac operon simulation (https://qubeshub.org/resources/phetlacoperon).

    https://qubeshub.org/qubesresources/publications/1427/?v=1

11. Testing for Hardy-Weinberg Equilibrium

    11 Sep 2019 | Teaching Materials | Contributor(s):

    By Claudia Neuhauser

    University of Houston

    Numbers Count Excel resource

    https://qubeshub.org/qubesresources/publications/1416/?v=1

12. Quartile Tutorial

    11 Sep 2019 | Teaching Materials | Contributor(s):

    By Claudia Neuhauser¹, David Phillip Schladt²

    1. University of Houston 2. University of Minnesota

    Numbers Count Excel resource

    https://qubeshub.org/qubesresources/publications/1406/?v=1

13. Confidence Intervals Tutorial

    09 Sep 2019 | Teaching Materials | Contributor(s):

    By Claudia Neuhauser¹, David Phillip Schladt²

    1. University of Houston 2. University of Minnesota

    Numbers Count Excel resource

    https://qubeshub.org/qubesresources/publications/754/?v=2

14. Optimal Foraging in Swirl

    15 Jul 2019 | Teaching Materials | Contributor(s):

    By Mary Elizabeth McWhirt¹, Emily Weigel¹

    Georgia Institute of Technology

    This lesson centers around the marginal value theorem (MVT, Charnov 1976), which describes how animals should forage in patches. It serves as a pre-lab to teach MVT basics, vectors, ANOVA, and...

    https://qubeshub.org/qubesresources/publications/1213/?v=1

15. Examining human impacts on tusk evolution in elephants using authentic research data using Serenity

    13 Jul 2019 | Teaching Materials | Contributor(s):

    By Kaitlin Bonner

    St. John Fisher College

    In this activity students explore and analyze real, authentic research data paired with HHMI’s “Selection for Tuskless Elephants” video in a hands-on investigation of human impacts on elephant...

    https://qubeshub.org/qubesresources/publications/1350/?v=1

16. Quantifying The Drivers and Impacts of Natural Disturbance Events – The 2013 Colorado Floods

    12 Jul 2019 | Teaching Materials | Contributor(s):

    By Heather Susanne Zimbler-DeLorenzo

    Alfred University

    This lesson focuses on ways that scientists identify and use data to understand ecological disturbance events using data from five public datasets. The main lesson focused on interpretation of...

    https://qubeshub.org/qubesresources/publications/1349/?v=1

17. Mars Colony

    11 Jun 2019 | Teaching Materials | Contributor(s):

    By James Burton Deemy

    College of Coastal Georgia

    In this exercise students work in groups to design an agroecosystem to feed a Mars Colony while accounting for space and energy transfer limitations.

    https://qubeshub.org/qubesresources/publications/1296/?v=1

18. Island Frogs

    11 Jun 2019 | Teaching Materials | Contributor(s):

    By James Burton Deemy

    College of Coastal Georgia

    This is an exercise in island biogeography that allows students to reconstruct splits in the evolutionary history of several hypothetical frog species.

    https://qubeshub.org/qubesresources/publications/1295/?v=1

19. A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!

    07 Jun 2019 | Teaching Materials | Contributor(s):

    By Rachael St. Jacques¹, Max Maza¹, Sabrina Robertson², Guoqing Lu³, Andrew Lonsdale⁴, Ray A Enke⁵

    1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University

    This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.

    https://qubeshub.org/qubesresources/publications/1092/?v=2

20. Intro to BIOMAAP - Highlander teacher notes

    31 May 2019 | Teaching Materials | Contributor(s):

    By Hannah Callender Highlander

    University of Portland

    How I implemented these materials

    https://qubeshub.org/qubesresources/publications/1261/?v=1