All Categories (1-20 of 32)

1. Using an Interactive Game, Gutsy, to Examine the Impacts of Pathogens and Everyday Events on the Human Gut Microbiome

   29 Aug 2024 | Teaching Materials | Contributor(s):

   By Ania A. Majewska*¹, Shannon J. Hostetter¹

   University of Georgia

   The human gut microbiome is often associated with ‘good bacteria’ in marketing campaigns for dietary supplements, probiotic drinks, and fermented foods. Yet, the dynamic and complex...

   https://qubeshub.org/publications/4905/?v=1

2. 

   Steven Carlson

   https://qubeshub.org/community/members/47879

3. 1-078-MonodGrowthModel-ModelingScenario

   29 Apr 2024 | Teaching Materials | Contributor(s):

   By Brian Winkel

   SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations

   Students model growth of bacteria E. coli in a limiting nutrient environment using data from a historical study.

   https://qubeshub.org/publications/3453/?v=2

4. 

   Chelsey VanDrisse

   https://qubeshub.org/community/members/46621

5. Genome Solver - A bioinformatics pipeline for community science

   20 Feb 2024 | Teaching Materials | Contributor(s):

   By Vinayak Mathur¹, Gaurav Arora², Anne Rosenwald³

   1. Cabrini University 2. Gallaudet University 3. Georgetown University

   The Genome Solver was an NSF-funded project developed as a way to train undergraduate life science faculty in basic web-based tools for bioinformatics. As part of the project we developed a one-day...

   https://qubeshub.org/publications/4648/?v=1

6. BioTA Podcast Episode #34 Biofilms Podcast Overview

   02 Feb 2024 | Teaching Materials | Contributor(s):

   By Seth Higbee¹, Dr Pankaj Mehrotra², J. Phil Gibson¹

   1. University of Oklahoma 2. University of the People, California, United States of America

   BioTA Episode #34: Biofilms Authors: Seth Higbee1, Pankaj Mehrotra2, J. Phil Gibson1Prokaryotes are often taught to us as being free living single-celled organisms that lack membrane bound...

   https://qubeshub.org/publications/4631/?v=1

7. Exploring the City of Biofilms: An Engaging Analogy-Based Activity for Students to Learn Biofilms

   10 Oct 2023 | Teaching Materials | Contributor(s):

   By Song Lin Chua*

   The Hong Kong Polytechnic University

   Multicellular biofilms constructed by microbes are key aspects of microbiology with significant implications in various fields, including medicine, environmental science, and biotechnology. While...

   https://qubeshub.org/publications/4535/?v=1

8. 

   Josh Modell

   https://qubeshub.org/community/members/38949

9. 

   Megan A Rúa

   https://qubeshub.org/community/members/38050

10. 

    Martín Martín Espariz

    https://qubeshub.org/community/members/37953

11. 

    Joseph Groom

    https://qubeshub.org/community/members/36947

12. 2011-Teleken-EtAl-Mathematical modeling of microbial growth in milk

    07 Apr 2023 | Teaching Materials | Contributor(s):

    By Jhony Tiago Teleken

    NA

    A mathematical model to predict microbial growth in milk was developed and analyzed. The model consists of a system of two differential equations of first order. The equations are based on physical...

    https://qubeshub.org/publications/4067/?v=1

13. 2004-Jones-Song-Thomas-Controlling wound healing through debridement

    04 Apr 2023 | Teaching Materials | Contributor(s):

    By Michael Jones¹, B Song¹, Diana Thomas¹

    NA

    In this article, a system of differential equations that models slough/wound interaction is developed.

    https://qubeshub.org/publications/3971/?v=1

14. 2018-Winkle-Igoshin-Bennett-Josic-Ott-Modeling_Mechanical_Interactions_in_Growing_Populations_of_Rod-Shaped_Bacteria

    08 Mar 2023 | Teaching Materials | Contributor(s):

    By James Winkle

    NA

    Here, we present an agent-based model that allows growing cells to detect and respond to mechanical interactions.

    https://qubeshub.org/publications/3749/?v=1

15. 1-078-MonodGrowthModel-ModelingScenario

    16 Jul 2022 | Teaching Materials | Contributor(s):

    By Brian Winkel

    SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations

    Students model growth of bacteria E. coli in a limiting nutrient environment using data from a historical study.

    https://qubeshub.org/publications/3453/?v=1

16. 

    Emily Nowicki

    https://qubeshub.org/community/members/29507

17. 1-062-BacteriaGrowth-ModelingScenario

    24 May 2022 | Teaching Materials | Contributor(s):

    By Arati Nanda Pati

    We offer students a simulation experience or data from a simulation and ask them to model the simulation using several approaches: exponential growth fit, difference equation, differential...

    https://qubeshub.org/publications/3268/?v=1

18. 1-115-ModelingWithFirstOrderODEs-ModelingScenario

    22 May 2022 | Teaching Materials | Contributor(s):

    By Michael Grayling

    University of Cambridge, Cambridge ENGLAND UK

    Several models using first order differential equations are offered with some questions on formulating a differential equations model with solutions provided.

    https://qubeshub.org/publications/3216/?v=1

19. Uninhibited Growth of Cells

    10 Mar 2022 | Teaching Materials | Contributor(s):

    By Emily Boyce

    South Puget Sound CC

    In this activity, students will explore the concept of binary fission, generation time, and bacterial growth curves, with an emphasis on the log phase. Students will use semi-log graphs and linear...

    https://qubeshub.org/publications/2895/?v=1

20. Science and Society: Integrating Historical Science Materials Into an Undergraduate Biology Course

    30 Aug 2021 | Teaching Materials | Contributor(s):

    By Shelley D. Copley*¹, Sean Babbs¹, Barbara Losoff¹

    University of Colorado Boulder

    Vision and Change in Undergraduate Biology Education (American Association for the Advancement of Science, 2011) stresses the importance of fostering an understanding of the relationship between...

    https://qubeshub.org/publications/2730/?v=1