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Population Demography in Swirl
15 May 2019 | Teaching Materials | Contributor(s):
By Emily Weigel
Georgia Institute of Technology
The students will learn to generate, test, and graphically represent basic hypotheses on data distributions using large datasets.
https://qubeshub.org/publications/1214/?v=1
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NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources
15 May 2019 | Teaching Materials | Contributor(s):
By Michael Sierk1, Sam S Donovan2, Bill Morgan3, Hayley Orndorf2, Mark A. Pauley4, Sabrina Robertson5, Elizabeth F Ryder6, William Tapprich7
1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. UNC-Chapel Hill 6. Worcester Polytechnic Institute 7. University of Nebraska-Omaha
Presentation on NIBLSE incubators at the 2019 Great Lakes Bioinformatics Conference
https://qubeshub.org/publications/1212/?v=1
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Interdisciplinary biology education: a holistic approach to an intractable problem
15 May 2019 | Teaching Materials | Contributor(s):
By Kristin Jenkins
BioQUEST
Presentation on interdisciplinary biology education at the 2019 Great Lakes Bioinformatics Conference
https://qubeshub.org/publications/1208/?v=1
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Margaret S Saha
https://qubeshub.org/community/members/11772
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Katie Lauren Rogers
https://qubeshub.org/community/members/11740
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Daniel Proud
https://qubeshub.org/community/members/11714
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Sequence Similarity: An inquiry based and "under the hood" approach for incorporating molecular sequence alignment in introductory undergraduate biology courses
02 May 2019 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Benita Brink1, Steven Roof2, Carlos Christopher Goller3, Sabrina Robertson3
1. Adams State University 2. Fairmont State University 3. North Carolina State University
This laboratory module, published on CourseSource, leads introductory biology students in the exploration of a basic set of bioinformatics concepts and tools.
https://qubeshub.org/publications/56/?v=5
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Lucia Vazquez
https://qubeshub.org/community/members/11628
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Rachael M St. Jacques
https://qubeshub.org/community/members/11576
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Jonathan Joel Lozada Pérez
https://qubeshub.org/community/members/11500
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NIBLSE Incubators: A community-based model for the development of bioinformatics learning resources
29 Mar 2019 | Teaching Materials | Contributor(s):
By Michael Sierk1, Sam S Donovan2, Bill Morgan3, Hayley Orndorf2, Mark A. Pauley4, Sabrina Robertson5, Elizabeth F Ryder6, William Tapprich7
1. Saint Vincent College 2. University of Pittsburgh 3. The College of Wooster 4. University of Nebraska at Omaha 5. NC State 6. Worcester Polytechnic Institute 7. University of Nebraska-Omaha
Presentation given at GLBIO 2019 on NIBLSE Incubators
https://qubeshub.org/publications/1116/?v=1
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A Fun Introductory Command Line Exercise: Next Generation Sequencing Quality Analysis with Emoji!
28 Feb 2019 | Teaching Materials | Contributor(s):
By Rachael St. Jacques1, Max Maza1, Sabrina Robertson2, Guoqing Lu3, Andrew Lonsdale4, Ray A Enke5
1. Department of Biology, James Madison University 2. Department of Psychology & Neuroscience, University of North Carolina at Chapel Hill 3. Department of Biology and School of Interdisciplinary Informatics, University of Nebraska Omaha 4. ARC Centre of Excellence in Plant Cell Walls, Melbourne University 5. James Madison University
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
https://qubeshub.org/publications/1092/?v=1
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Mao-Lun Weng
https://qubeshub.org/community/members/10881
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Chenglin Chai
https://qubeshub.org/community/members/10465
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Plasmodium Problem Space
07 Jan 2019 | Teaching Materials | Contributor(s):
By Sam S Donovan
University of Pittsburgh
This problem space brings together diverse resources with the goal of helping biology teachers and learners engage in research investigations.
https://qubeshub.org/publications/1009/?v=1
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Using Undergraduate Molecular Biology Labs to Discover Targets of miRNAs in Humans
04 Jan 2019 | Teaching Materials | Contributor(s):
By Adam Idica1, Jordan Thompson1, Irene Munk Pedersen1, Pavan Kadandale1
University of California, Irvine
In this lesson, we describe an easily adaptable lab module that can be used in existing undergraduate molecular biology lab courses to conduct authentic scientific research, published in CourseSource
https://qubeshub.org/publications/1007/?v=1
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Using computational molecular modeling software to demonstrate how DNA mutations cause phenotypes
04 Jan 2019 | Teaching Materials | Contributor(s):
By Tara Phelps-Durr
Radford University
This lesson is a five-week series of laboratory activities designed to help students transition from applying lower order thinking skills to the central dogma to applying higher-order thinking skills.
https://qubeshub.org/publications/1006/?v=1
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Teaching RNAseq at Undergraduate Institutions: A tutorial and R package from the Genome Consortium for Active Teaching
04 Jan 2019 | Teaching Materials | Contributor(s):
By Mark Phillip Peterson1, Jacob T Malloy2, Vincent P Buonaccorsi2, James H Marden3
1. Viterbo University 2. Juniata College 3. Pennsylvania State University
This lesson plan was created to teach RNAseq analysis as a part of GCAT-SEEK network. It is provided here, both in finished form and with the modifiable source code, to allow flexible adaptation to...
https://qubeshub.org/publications/1005/?v=1
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Murder by HIV? Undergraduate edition
04 Jan 2019 | Teaching Materials | Contributor(s):
By Naowarat (Ann) Cheeptham1, Laura B. Regassa2, Michèle I. Shuster3
1. Thompson Rivers University 2. Georgia Southern University 3. New Mexico State University
Bioinformatics case study focusing on phylogenetic tree interpretation, published in the National Center for Case Study Teaching in Science
https://qubeshub.org/publications/1004/?v=1
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Making toast: Using analogies to explore concepts in bioinformatics
04 Jan 2019 | Teaching Materials | Contributor(s):
By Kate L. Hertweck
University of Texas at Tyler
Module using analogies to introduce students to genomics
https://qubeshub.org/publications/1003/?v=1