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  1. CURE-all: Large Scale Implementation of Authentic DNA Barcoding Research into First-Year Biology Curriculum

    28 Aug 2021 | Teaching Materials | Contributor(s):

    By Oliver Hyman*1, Elizabeth Doyle1, Joseph Harsh1, Joanna Mott2, Andrea Pesce1, Bejan Rasoul1, Kyle Seifert1, Ray Enke1

    1. James Madison University 2. California State University

    Growing calls in science education reform have emphasized wide-scale engagement of first-year undergraduate students in authentic research experiences; however, large course enrollments, inadequate...

    https://qubeshub.org/publications/2625/?v=1

  2. DNA Subway Learning Resources

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/publications/164/?v=2

  3. DNA Subway Learning Resources

    16 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    Cold Spring Harbor Laboratory

    DNA Subway is a NIBLSE Recommended resource. This is a collection of learning resources associated with DNA Subway.

    https://qubeshub.org/publications/164/?v=1

  4. Intro to DNA Barcoding

    28 May 2018 | Teaching Materials | Contributor(s):

    By Oliver Hyman1, Andrea Pesce2, Elizabeth Doyle2, Ray A Enke1

    1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University

    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 30-45 min lecture or lab class period.

    https://qubeshub.org/publications/600/?v=1

  5. Intro to DNA Subway Blue Line

    28 May 2018 | Teaching Materials | Contributor(s):

    By Oliver Hyman1, Andrea Pesce2, Elizabeth Doyle2, Ray A Enke1

    1. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 2. James Madison University

    This is a classroom tested introductory lesson & activity to introduce DNA Barcoding and DNA Subway Blue Line. It is for novices and will fit into a 1 hr 50 min lecture or lab class period.

    https://qubeshub.org/publications/599/?v=1

  6. Long-read Sequencing Technology

    18 Jul 2024 | Teaching Materials | Contributor(s):

    By Katie M. Sandlin

    Genomics Education Partnership

    This 50 minute lecture on long-read sequencing technology covers the following items: 1) Review of RNA-Seq Short-read Sequencing, 2) Overview and benefits of Long-read Sequencing, 3) Oxford...

    https://qubeshub.org/publications/4897/?v=1

  7. Meiosis: A Play in Three Acts, Starring DNA Sequence

    27 Aug 2021 | Teaching Materials | Contributor(s):

    By Dina L Newman1, Leslie Kate Wright1

    Rochester Institute of Technology

    Meiosis is well known for being a sticky topic that appears repeatedly in biology curricula. We observe that a typical undergraduate biology major cannot correctly identify haploid and diploid...

    https://qubeshub.org/publications/2589/?v=1

  8. Split Decomp

    19 Aug 2024 | Teaching Materials | Contributor(s):

    By Anton E Weisstein1, John Jungck2

    1. Truman State University 2. Beloit College

    This Excel worksheet performs split decomposition on a set of four DNA sequences and their associated amino acid sequences. The user can type in the sequences or paste them in from a text file.

    https://qubeshub.org/publications/4962/?v=1

  9. Tackling "Big Data" with Biology Undergrads: A Simple RNA-seq Data Analysis Tutorial Using Galaxy

    28 Aug 2021 | Teaching Materials | Contributor(s):

    By Matthew Anthony Escobar*1, William Morgan2, Irina Makarevitch3, Sabrina Robertson4

    1. California State University San Marcos 2. The College of Wooster 3. Hamline University 4. North Carolina State University

    Analyzing high-throughput DNA sequence data is a fundamental skill in modern biology. However, real and perceived barriers such as massive file sizes, substantial computational requirements, and...

    https://qubeshub.org/publications/2626/?v=1

  10. Using DNA Subway to Analyze Sequence Relationships

    28 May 2018 | Teaching Materials | Contributor(s):

    By Jason Williams1, Ray A. Enke2, Oliver Hyman2, Emily Lescak3, Sam S Donovan4, William Tapprich5, Elizabeth F Ryder6

    1. DNA Learning Center 2. The Department of Biology, James Madison University; The Center for Genome & Metagenome Studies, James Madison University 3. University of Alaska 4. University of Pittsburgh 5. University of Nebraska-Omaha 6. Worcester Polytechnic Institute

    This is a bioinformatics exercise using the DNA Subway Blue Line, a user-friendly pipeline of bioinformatics tools, to analyze a collection of mosquito DNA bar-code sequences.

    https://qubeshub.org/publications/165/?v=2

  11. Using DNA Subway to Analyze Sequence Relationships

    18 Oct 2017 | Teaching Materials | Contributor(s):

    By Jason Williams

    DNA Learning Center

    This is a bioinformatics exercise using DNA Subway

    https://qubeshub.org/publications/165/?v=1

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