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William M Maza
Rachael M St. Jacques
Intro to Command Line Coding Genomics Analysis
28 Feb 2019 | Teaching Materials | Contributor(s):
By Rachael St. Jacques1, Max Maza1, Ray A Enke1
James Madison University
This resource is a fun computer-based intro to command line programming. The activity takes FASTQ NGS data files and runs a fun program called FASTQE.
Making toast: Using analogies to explore concepts in bioinformatics
04 Jan 2019 | Teaching Materials | Contributor(s):
By Kate L. Hertweck
University of Texas at Tyler
Module using analogies to introduce students to genomics
A Hands-on Introduction to Hidden Markov Models
By Tony Weisstein1, Elena Gracheva2, Zane Goodwin2, Zongtai Qi2, Wilson Leung2, Christopher D. Shaffer2, Sarah C.R. Elgin2
1. Truman State University 2. Washington University in St. Louis
A lesson in which students will understand the basic structure of an HMM, the types of data used in ab initio gene prediction, and its consequent limitations.
Anne M Brown
Cintia Fabiana Hongay
James S. Santangelo
Bioimage Informatics Activity
26 Jul 2018 | Teaching Materials | Contributor(s):
By David Julian
Univ of Florida
Students use basic bioimage informatics techniques to acquire quantitative data from images of cultured cells and test a hypothesis about the effect of a genetic mutation on cellular phenotypes
Drug screening and cancer resistance: EGFR Activity
25 Jul 2018 | Teaching Materials | Contributor(s):
By Holly Basta
Rock Mountain College
This activity explores a specific gene (egfr) and its role in cancer. EGFR was introduced with the Gene Card Activities, researched throughout the semester, and then authentic image data of...
Videos on Java for courses at University of Tennessee
16 Apr 2018 | Teaching Materials | Contributor(s):
By Hong Qin
Eight videos developed by Hong Qin about using Java at the University of Tennessee Chattanooga
Java array and random number generator, hints
Java, UTC, Fall 2017