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Integration of Bioinformatics into Life Science Curricula: Community Development, Dissemination, and Assessment of a NIBLSE Learning Resource
23 Jul 2020 | Teaching Materials | Contributor(s):
By Adam Kleinschmit1, Rachel Cook2, Barbara Murdoch3, Elizabeth F Ryder4, William Tapprich5
1. University of Dubuque 2. Fairmont State University 3. Eastern Connecticut State University 4. Worcester Polytechnic Institute 5. University of Nebraska-Omaha
Big data and computational tools have transformed the way we address biological questions. To prepare undergraduates for tomorrow’s challenges, life science curricula should integrate the...
The Genomics Education Partnership: Introducing Undergraduates to Research by Engaging Them in Genome Annotation
By Sarah Elgin1, Wilson Leung1, Anne Rosenwald2, David Lopatto3, Charles Hauser4, Catherine Reinke5, Laura Reed6
1. Washington University in St. Louis 2. Georgetown University 3. Grinnell College 4. St. Edward's University 5. Linfield College 6. The University of Alabama
Since 2006, the Genomics Education Partnership (GEP; http://gep.wustl.edu) has helped faculty bring genomics research experiences into the undergraduate curriculum.
The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE): Barriers to Integration
By Anne Rosenwald1, Elizabeth Dinsdale2, William Morgan3, Mark A. Pauley4, William Tapprich5, Eric Triplett6, Jason Williams7
1. Georgetown University 2. San Diego State University 3. The College of Wooster 4. University of Nebraska at Omaha 5. University of Nebraska-Omaha 6. University of Florida 7. Cold Spring Harbor Laboratory
The Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) seeks to promote the use of bioinformatics and data science as a way to teach biology.
Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life sciences education
By William Morgan1, Sam S Donovan2, Hayley Orndorf2, Sabrina Robertson3, Elizabeth F Ryder4, Michael Sierk5, Anne Rosenwald6, Elizabeth Dinsdale7, Eric Triplett8, Mark Pauley9, William Tapprich10
1. The College of Wooster 2. University of Pittsburgh 3. NC State 4. Worcester Polytechnic Institute 5. Saint Vincent College 6. Georgetown University 7. San Diego State University 8. University of Florida 9. National Science Foundation 10. University of Nebraska-Omaha
To efficiently and effectively integrate bioinformatics instruction into undergraduate life science curricula, educators would benefit from open access, high-quality learning resources (LRs) for...
The Genomics Education Partnership: Exploring best practices in implementation of a genomics CURE
By Matthew Wawersik1, Anna Allen2, Cindy Arrigo3, Andrew Arsham4, Daron Barnard5, Rebecca Burgess6, Justin DiAngelo7, Jennifer Jemc8, Christopher Jones9, Lisa Kadlec10, Adam Kleinschmit11, Judith Leatherman12, David Lopatto13, Mollie Manier14, Hemlata Mistry15, Nathan Mortimer16, Alexis Nagengast15, Susan Parish17, Anne Rosenwald18, Joyce Stamm19, Sarah Elgin20, Laura Reed21
1. William & Mary 2. Howard University 3. New Jersey City University 4. Bemidji State University 5. Worcester State University 6. Stevenson University 7. Penn State Berks 8. Loyola University Chicago 9. Moravian College 10. Wilkes University 11. Adams State University 12. University of Northern Colorado 13. Grinnell College 14. George Washington University 15. Widener University 16. Illinois State University 17. McDaniel College 18. Georgetown University 19. University of Evansville 20. Washington University in St. Louis 21. University of Alabama
Since 2006, the Genomics Education Partnership (GEP) has incorporated authentic genomics research experiences into the undergraduate curriculum.
Genomics Education Alliance: Towards Genomics CURE templates
By Vince Buonaccorsi1, Arthur Hunt2, Emily Wiley3, Sandesh Subramanya4, Wilson Leung5, Sally Elgin6
1. Juniata College 2. University of Kentucky Lexington 3. Claremont McKenna College 4. Austin Community College 5. Washington University in St. Louis 6. Washington University - St. Louis
Here we present major findings of a national survey of faculty teaching genomics CUREs conducted by the GEA, and our work on presenting relevant resources on the QUBES web portal.
Making bioinformatics tools classroom-friendly
By Jason Williams, Wilson Leung1, Cornel Ghiban2
1. Washington University in St. Louis 2. Cold Spring Harbor Laboratory
Poster on using Cyverse resources to make classroom that make using bioinformatics in the classroom a more manageable experience presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity
HHMI SEA-PHAGES and GENES: Course-based UREs Designed for All
21 Jul 2020 | Teaching Materials | Contributor(s):
By Vic Sivanathan
Howard Hughes Medical Institute
The HHMI Science Education Alliance (SEA) program supports a community of faculty members and institutions embed research as a fundamental component of early undergraduate science curricula.
Comparing Primary and Secondary Forest in a Preserve in Plano Texas: A Forest Ecology Course-based Undergraduate Research Experience (CURE) for Non-Majors and Lower-Level Majors
By Tamara Basham
Collin County Commuity College District
An activity that can be conducted as an online or field exercise in which students develop and test their hypotheses about how forest stand characteristics differ between two forest types.
Microbiomes forAll: The Research Experiences in Microbiomes Network
By Jessica Joyner1, Davida Smyth2, Avrom Caplan3, Theodore Muth4
1. Georgia State University 2. The New School 3. Pace University 4. CUNY Brooklyn College
Poster on REMNet presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity
Tiny Earth: Studentsourcing antibiotic discovery
By SARAH MILLER
Poster on Tiny Earth presented at the 2020 BIOME Institute: Cultivating Scientific Curiosity
CUREnet: The Course-based Undergraduate Research Experience Network
20 Jul 2020 | Teaching Materials | Contributor(s):
By Erin Dolan
University of Georgia
CUREnet connects people, programs, and networks working to make undergraduate research more accessible.
Fibroblast spheroids and other models of wound healing and infectivity
By Victoria Virador1, Niloufar Alsadat Hassan Tehrani1, Spencer Adkins1, Alex Devlin1, Gabriel Virador1
The goal of our research is to create a functional in vitro 3D model of skin for the purpose of experimentation.
HITS: A network to create inquiry-based case studies that make high-throughput approaches and discovery accessible
18 Jul 2020 | Teaching Materials | Contributor(s):
By Carlos Christopher Goller1, Sabrina Robertson2
1. North Carolina State University 2. UNC-Chapel Hill
HITS brings together interdisciplinary groups of HT researchers and instructors to produce authentic HT case studies that can be implemented in a variety of courses, allowing students to analyze...
Faculty Mentoring Networks: Community Professional Development for the Digital Age
10 Jul 2020 | Teaching Materials | Contributor(s):
By Deborah Rook1, Sam S Donovan2, Carrie Diaz Eaton3, Kristin Jenkins1, Drew LaMar4, Jeremy M Wojdak5, Nicole Chodkowski5, Elia Crisucci2, Adam Fagen6, Gabriela Hamerlinck7, Elizabeth Hamman8, Hayley Orndorf2
1. BioQUEST 2. University of Pittsburgh 3. Unity College 4. College of William and Mary 5. Radford University 6. BioQUEST Curriculum Consortium 7. QUBES, BioQUEST 8. Tulane University
Poster for BioQUEST Summer Workshop 2020.What is an FMN? What is it like to be in one? What are the benefits?
Diversity, Equity, and Inclusion in Ecology: Introducing the Environmental Data Science Inclusion Network (EDSIN)
21 May 2020 | Teaching Materials | Contributor(s):
By Alycia Crall1, Carrie Diaz Eaton2, Megan A. Jones1, Claire Lunch1, Katherine Jones3
1. National Ecological Observatory Network 2. Unity College 3. NEON / Battelle
The Environmental Data Science Inclusion Network (EDSIN) was launched in the spring of 2019 following an NSF INCLUDES conference. This poster, summarizing the event, was presented at the 2019...
Open QUBES - A Faculty Use Case of Open Practice
18 Nov 2019 | Teaching Materials | Contributor(s):
By Sarah Prescott
University of New Hampshire
QUBES has been a critical component of my continued success as an open scholar. This poster details several of these outcomes with my lived experience working with QUBES as an Open scholar as a...
Interconnections in The Open Ecosystem
11 Sep 2019 | Teaching Materials | Contributor(s):
By Karen Cangialosi
Keene State College
Presentation on open education and open science given as the keynote address at the 2019 BioQUEST & QUBES Summer Workshop
Teaching introductory bioinformatics with Jupyter notebook-based active learning
17 Aug 2019 | Teaching Materials | Contributor(s):
By Colin Dewey
University of Wisconsin - Madison
Presentation on teaching introductory bioinformatics with Jupyter notebook-based active learning at the 2019 Great Lakes Bioinformatics Conference
Data Science as a Superpower
15 Aug 2019 | Teaching Materials | Contributor(s):
By Amelia McNamara
Presentation on data science education given at the 2019 BioQUEST & QUBES Summer Workshop