06 Oct 2017 | Software (Off-site) | Contributor(s): Robert T Pennock, Diane Blackwood
Avida-ED is an award-winning educational application developed at Michigan State University for undergraduate biology courses to help students learn about evolution and scientific method by...
05 Aug 2017 | Software (On-site)
Business analytics using R and Shiny.
25 Jun 2017 | Software (On-site) | Contributor(s): Drew LaMar
A platform-independent browser-based interface to data science tools for the classroom.
11 Jun 2017 | Software (Off-site) | Contributor(s): Bob Sheehy
A Hardy-Weinberg based population genetics simulator. This program assumes a single gene and two alleles. Simulation of allele frequency changes similar to Felsenstein's Simul8 or PopG....
05 May 2017 | Software (On-site) | Contributor(s): Martin Hunt
Starts the Jupyter notebook server in your "notebooks" directory in your home directory.
Genetic Drift Simulation - NetLogo
23 Jun 2016 | Software (Off-site) | Contributor(s): Tony Weisstein
This model simulates genetic drift in a population. The user can control the population size, whether the population is subdivided into separate local populations, and the amount of gene...
21 Mar 2016 | Software (On-site)
Wood density shiny app
24 Jan 2016 | Software (Off-site)
GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by...
18 Jan 2016 | Software (On-site)
OpenRefine (formerly Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.
19 Oct 2015 | Software (On-site)
DFIELD is an interactive tool that graphs a direction field for a given differential equation.
Populus: Simulations of Population Biology
05 Oct 2015 | Software (Off-site) | Contributor(s): D. N. Alstad
This resource has been updated - find the current version here: https://qubeshub.org/publications/352
The Populus software contains a set of simulations that we use to teach population...
04 Sep 2015 | Software (On-site) | Contributor(s): Drew LaMar
R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that...
Augmented Reality Metabolic Pathways (ARMET)
25 Aug 2015 | Software (Off-site) | Contributor(s): Eduardo Galembeck
The New Media Consortium (NMC) Horizon Project defines educational technology in a broad sense as tools and resources that are used to improve teaching, learning, and creative inquiry. Within the...
27 Jun 2015 | Software (On-site) | Contributor(s): Drew LaMar
Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.
24 Jun 2015 | Software (On-site)
A quality control tool for high throughput sequence data.
19 Jun 2015 | Software (On-site)
A modular system for evolutionary analysis
17 Jun 2015 | Software (On-site)
Image processing and analysis in Java.
Ka-me: Voronoi Image Analyzer 1.0
15 Jun 2015 | Software (On-site) | Contributor(s): John R Jungck
Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay...
20 May 2015 | Software (On-site) | Contributor(s): Drew LaMar
Interactive statistics package using R and Shiny.
Statistical Power for One-Sample t-Test
19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar
Interactive visualization of statistical power for a one-sample t-test.