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Tags: Resources @ QUBES - Software

All Categories (1-20 of 45)

  1. Radiant Lite

    24 Jul 2019 | | Contributor(s):: Drew LaMar

    Stripped down version of Radiant on QUBES

  2. Cats Teach Stats Binomial Test

    27 Jun 2019 | | Contributor(s):: Jenny Hazlehurst, Suann Yang, Darcy Taniguchi

    Fight stats anxiety! Students collect binary data from cute animal videos and analyze the data using a binomial test

  3. Exploring how climate will impact plant-insect distributions and interactions using open data and informatics

    06 Jun 2019 | Teaching Materials | Contributor(s):

    By Wendy Clement1, Kathleen Prudic2, Jeffrey Oliver3

    1. The College of New Jersey 2. University of Arizona 3. University of Arizona Libraries

    This teaching module provides an entry point for students to learn about data science, open data repositories (e.g., citizen science data), and species distribution modeling to study the effects of...

    https://qubeshub.org/qubesresources/publications/1286/?v=1

  4. Ebola Model

    26 Apr 2019 | | Contributor(s):: Michael James, Lauren Mayer, Keely Copperthite

    Simple agent based SIR model of Ebola epidemics.

  5. Phototropism and Gravitropism: Quantifying Stem Curvature in Plants Introduction

    15 Feb 2019 | Teaching Materials | Contributor(s):

    By Lou Gross1, Monica Beals1, Susan Harrell1

    University of Tennessee Knoxville

    This module introduces phototropism and gravitropism in the context of understanding how to quantify stem curvature of plants. It is intended for an introductory biology audience.

    https://qubeshub.org/qubesresources/publications/1072/?v=1

  6. Predator-prey models as XPP files

    12 Nov 2018 | | Contributor(s):: Eli E Goldwyn

    These are the .ode files that XPP takes as input.  lv.ode is the Lotka-Volterra predator-prey model rm.ode is the Rosenzweig-MacArthur model rm3.ode is the Rosnezweig-MacArthur model but with predation following a Holling Type III functional response. The file rm.ode is...

  7. Outstanding Oaks: Quercus phenology at NEON sites

    09 Oct 2018 | | Contributor(s):: Jackie Matthes

    This app visualizes data from the National Ecological Observatory Network (NEON) observations of oak phenology at three different sites.

  8. Gene Machine: The Lac Operon

    08 Sep 2018 |

    Explore the effects of mutations within the lac operon by adding or removing genes from the DNA.

  9. Jupyter Lab

    13 Jul 2018 | | Contributor(s):: Erich Huebner

    An extensible environment for interactive and reproducible computing, based on the Jupyter Notebook and Architecture.

  10. Cultivating Your Growth Mindset

    22 Jun 2018 | | Contributor(s):: Kika Tuff, Jeremy M Wojdak, Arietta Fleming-Davies

    Learn what a growth mindset is and how it improves learning

  11. Investigating Trade-offs among Mammal Traits

    07 Jun 2018 | | Contributor(s):: Jackie Matthes

    This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

  12. Modeling the Mechanisms of Evolution

    25 May 2018 | | Contributor(s):: Jackie Matthes

    Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.

  13. R Shiny App Example

    09 May 2018 | | Contributor(s):: Drew LaMar

    This is a simple example used to demonstrate what is needed to host your R Shiny app on QUBESHub.

  14. Avida-ED

    06 Oct 2017 | | Contributor(s):: Robert T Pennock, Diane Blackwood

         This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/874Avida-ED is an award-winning educational application developed at Michigan State University...

  15. Radiant

    16 Sep 2015 |

    Business analytics using R and Shiny.

  16. Web Popgen

    11 Jun 2017 | | Contributor(s):: Bob Sheehy

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/842A Hardy-Weinberg based population genetics simulator. This program assumes a single gene and two alleles. Simulation of allele frequency changes similar to...

  17. Jupyter Notebook

    05 May 2017 | | Contributor(s):: Martin Hunt

    Starts the Jupyter notebook server in your "notebooks" directory in your home directory.

  18. Genetic Drift Simulation - NetLogo

    22 Jun 2016 | | Contributor(s):: Tony Weisstein

    This model simulates genetic drift in a population.  The user can control the population size, whether the population is subdivided into separate local populations, and the amount of gene flow (if any) between local populations.  Phenotype frequency in each subpopulation is plotted as a...

  19. Wood Density

    15 Oct 2015 |

    Wood density shiny app

  20. GENI-ACT

    24 Jan 2016 |

    GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by exporting to a sequin file format. GENI-ACT also has ported the education components from IMG-ACT....