Tags: Resources @ QUBES - Software

All Categories (1-20 of 33)

  1. Avida-ED

    06 Oct 2017 | Software (Off-site) | Contributor(s): Robert T Pennock, Diane Blackwood

    Avida-ED is an award-winning educational application developed at Michigan State University for undergraduate biology courses to help students learn about evolution and scientific method by...


  2. Radiant

    05 Aug 2017 | Software (On-site)

    Business analytics using R and Shiny.


  3. Serenity

    25 Jun 2017 | Software (On-site) | Contributor(s): Drew LaMar

    A platform-independent browser-based interface to data science tools for the classroom.


  4. Web Popgen

    11 Jun 2017 | Software (Off-site) | Contributor(s): Bob Sheehy

    A Hardy-Weinberg based population genetics simulator. This program assumes a single gene and two alleles. Simulation of allele frequency changes similar to Felsenstein's Simul8 or PopG....


  5. Jupyter Notebook

    05 May 2017 | Software (On-site) | Contributor(s): Martin Hunt

    Starts the Jupyter notebook server in your "notebooks" directory in your home directory.


  6. Genetic Drift Simulation - NetLogo

    23 Jun 2016 | Software (Off-site) | Contributor(s): Tony Weisstein

    This model simulates genetic drift in a population.  The user can control the population size, whether the population is subdivided into separate local populations, and the amount of gene...


  7. Wood Density

    21 Mar 2016 | Software (On-site)

    Wood density shiny app



    24 Jan 2016 | Software (Off-site)

    GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by...


  9. OpenRefine

    18 Jan 2016 | Software (On-site)

    OpenRefine (formerly Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.


  10. DFIELD

    19 Oct 2015 | Software (On-site)

    DFIELD is an interactive tool that graphs a direction field for a given differential equation.


  11. Populus: Simulations of Population Biology

    05 Oct 2015 | Software (Off-site) | Contributor(s): D. N. Alstad

    This resource has been updated - find the current version here: https://qubeshub.org/publications/352 The Populus software contains a set of simulations that we use to teach population...


  12. R Commander

    04 Sep 2015 | Software (On-site) | Contributor(s): Drew LaMar

    R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that...


  13. Augmented Reality Metabolic Pathways (ARMET)

    25 Aug 2015 | Software (Off-site) | Contributor(s): Eduardo Galembeck

    The New Media Consortium (NMC) Horizon Project defines educational technology in a broad sense as tools and resources that are used to improve teaching, learning, and creative inquiry. Within the...


  14. BactVsPhage

    27 Jun 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.


  15. FastQC

    24 Jun 2015 | Software (On-site)

    A quality control tool for high throughput sequence data.


  16. Mesquite

    19 Jun 2015 | Software (On-site)

    A modular system for evolutionary analysis


  17. ImageJ

    17 Jun 2015 | Software (On-site)

    Image processing and analysis in Java.


  18. Ka-me: Voronoi Image Analyzer 1.0

    15 Jun 2015 | Software (On-site) | Contributor(s): John R Jungck

    Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay...


  19. BioRadiant

    20 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive statistics package using R and Shiny.


  20. Statistical Power for One-Sample t-Test

    19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive visualization of statistical power for a one-sample t-test.