All Categories (1-20 of 48)

1. Collecting and analyzing binomial data

   out of 5 stars 

   17 Jul 2020 | | Contributor(s):: Suann Yang, Darcy Taniguchi, Jenny Hazlehurst

   In this tool, students watch an Internet cat video, collect binomial data on cat paw usage, and graph and analyze the data with a binomial test in R using the swirl package.

2. Swirl

   out of 5 stars 

   10 Jul 2020 |

   Swirl: Learn R, in R

3. Fitting of data by eye

   out of 5 stars 

   03 May 2020 | | Contributor(s):: Dmitry Kondrashov

   Allows user to select parameters to visually fit the plot of a data set

4. Radiant Lite

   out of 5 stars 

   24 Jul 2019 | | Contributor(s):: Drew LaMar

   Stripped down version of Radiant on QUBES

5. Cats Teach Stats Binomial Test

   out of 5 stars 

   27 Jun 2019 | | Contributor(s):: Jenny Hazlehurst, Suann Yang, Darcy Taniguchi

   Fight stats anxiety! Students collect binary data from cute animal videos and analyze the data using a binomial test

6. Ebola Model

   out of 5 stars 

   26 Apr 2019 | | Contributor(s):: Michael James, Lauren Mayer, Keely Copperthite

   Simple agent based SIR model of Ebola epidemics.

7. Predator-prey models as XPP files

   out of 5 stars 

   12 Nov 2018 | | Contributor(s):: Eli E Goldwyn

   These are the .ode files that XPP takes as input.  lv.ode is the Lotka-Volterra predator-prey model rm.ode is the Rosenzweig-MacArthur model rm3.ode is the Rosnezweig-MacArthur model but with predation following a Holling Type III functional response. The file rm.ode is...

8. Avida-ED

   25 Oct 2018 | Teaching Materials | Contributor(s):

   By Robert T Pennock¹, Diane Blackwood¹

   Michigan State University

   Avida-ED is an award-winning educational application developed at Michigan State University for undergraduate biology courses to help students learn about evolution and scientific method.

   https://qubeshub.org/publications/874/?v=1

9. Outstanding Oaks: Quercus phenology at NEON sites

   out of 5 stars 

   09 Oct 2018 | | Contributor(s):: Jackie Matthes

   This app visualizes data from the National Ecological Observatory Network (NEON) observations of oak phenology at three different sites.

10. IPMpack: an R package for Integral Projection Models

    11 Sep 2018 | Teaching Materials | Contributor(s):

    By C. Jessica E. Metcalf¹, Sean M. McMahon², Roberto Salguero-Gómez³, Eelke Jongejans⁴, Cory Merow⁵

    1. University of Oxford 2. Smithsonian Tropical Research Institute 3. University of Queensland 4. Radbound University Nijmegen 5. STRI and University of Connecticut

    IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models.

    https://qubeshub.org/publications/779/?v=1

11. Gene Machine: The Lac Operon

    out of 5 stars 

    08 Sep 2018 |

    Explore the effects of mutations within the lac operon by adding or removing genes from the DNA.

12. Jupyter Lab

    out of 5 stars 

    13 Jul 2018 | | Contributor(s):: Erich Huebner

    An extensible environment for interactive and reproducible computing, based on the Jupyter Notebook and Architecture.

13. Cultivating Your Growth Mindset

    out of 5 stars 

    22 Jun 2018 | | Contributor(s):: Kika Tuff, Jeremy M Wojdak, Arietta Fleming-Davies

    Learn what a growth mindset is and how it improves learning

14. Investigating Trade-offs among Mammal Traits

    out of 5 stars 

    07 Jun 2018 | | Contributor(s):: Jackie Matthes

    This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.

15. Modeling the Mechanisms of Evolution

    out of 5 stars 

    25 May 2018 | | Contributor(s):: Jackie Matthes

    Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.

16. R Shiny App Example

    out of 5 stars 

    09 May 2018 | | Contributor(s):: Drew LaMar

    This is a simple example used to demonstrate what is needed to host your R Shiny app on QUBESHub.

17. Avida-ED

    out of 5 stars 

    06 Oct 2017 | | Contributor(s):: Robert T Pennock, Diane Blackwood

         This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/874Avida-ED is an award-winning educational application developed at Michigan State University...

18. Radiant

    out of 5 stars 

    16 Sep 2015 |

    Business analytics using R and Shiny.

19. Web Popgen

    out of 5 stars 

    11 Jun 2017 | | Contributor(s):: Bob Sheehy

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/842A Hardy-Weinberg based population genetics simulator. This program assumes a single gene and two alleles. Simulation of allele frequency changes similar to...

20. Jupyter Notebook

    out of 5 stars 

    05 May 2017 | | Contributor(s):: Martin Hunt

    Starts the Jupyter notebook server in your "notebooks" directory in your home directory.