Tags: Resources @ QUBES - Software

All Categories (1-20 of 32)

  1. Radiant

    05 Aug 2017 | Software (On-site)

    Business analytics using R and Shiny.

    https://qubeshub.org/resources/radiant

  2. Serenity

    25 Jun 2017 | Software (On-site) | Contributor(s): Drew LaMar

    A platform-independent browser-based interface to data science tools for the classroom.

    https://qubeshub.org/resources/serenity

  3. Web Popgen

    11 Jun 2017 | Software (Off-site) | Contributor(s): Bob Sheehy

    A Hardy-Weinberg based population genetics simulator. This program assumes a single gene and two alleles. Simulation of allele frequency changes similar to Felsenstein's Simul8 or PopG....

    https://qubeshub.org/resources/990

  4. Jupyter Notebook

    05 May 2017 | Software (On-site) | Contributor(s): Martin Hunt

    Starts the Jupyter notebook server in your "notebooks" directory in your home directory.

    https://qubeshub.org/resources/jupyter

  5. Genetic Drift Simulation - NetLogo

    23 Jun 2016 | Software (Off-site) | Contributor(s): Tony Weisstein

    This model simulates genetic drift in a population.  The user can control the population size, whether the population is subdivided into separate local populations, and the amount of gene...

    https://qubeshub.org/resources/903

  6. Wood Density

    21 Mar 2016 | Software (On-site)

    Wood density shiny app

    https://qubeshub.org/resources/wooddensity

  7. GENI-ACT

    24 Jan 2016 | Software (Off-site)

    GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by...

    https://qubeshub.org/resources/874

  8. OpenRefine

    18 Jan 2016 | Software (On-site)

    OpenRefine (formerly Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.

    https://qubeshub.org/resources/openrefine

  9. DFIELD

    19 Oct 2015 | Software (On-site)

    DFIELD is an interactive tool that graphs a direction field for a given differential equation.

    https://qubeshub.org/resources/dfield

  10. Populus: Simulations of Population Biology

    05 Oct 2015 | Software (Off-site) | Contributor(s): D. N. Alstad

    The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a menu, and...

    https://qubeshub.org/resources/40

  11. R Commander

    04 Sep 2015 | Software (On-site) | Contributor(s): Drew LaMar

    R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that...

    https://qubeshub.org/resources/rcommander

  12. Augmented Reality Metabolic Pathways (ARMET)

    25 Aug 2015 | Software (Off-site) | Contributor(s): Eduardo Galembeck

    The New Media Consortium (NMC) Horizon Project defines educational technology in a broad sense as tools and resources that are used to improve teaching, learning, and creative inquiry. Within the...

    https://qubeshub.org/resources/597

  13. BactVsPhage

    27 Jun 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

    https://qubeshub.org/resources/bactvsphage

  14. FastQC

    24 Jun 2015 | Software (On-site)

    A quality control tool for high throughput sequence data.

    https://qubeshub.org/resources/fastqc

  15. Mesquite

    19 Jun 2015 | Software (On-site)

    A modular system for evolutionary analysis

    https://qubeshub.org/resources/mesquite

  16. ImageJ

    17 Jun 2015 | Software (On-site)

    Image processing and analysis in Java.

    https://qubeshub.org/resources/imagej

  17. Ka-me: Voronoi Image Analyzer 1.0

    15 Jun 2015 | Software (On-site) | Contributor(s): John R Jungck

    Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay...

    https://qubeshub.org/resources/kame

  18. BioRadiant

    20 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive statistics package using R and Shiny.

    https://qubeshub.org/resources/bioradiant

  19. Statistical Power for One-Sample t-Test

    19 May 2015 | Software (On-site) | Contributor(s): Drew LaMar

    Interactive visualization of statistical power for a one-sample t-test.

    https://qubeshub.org/resources/statpowerviz

  20. PPLANE

    06 Apr 2015 | Software (On-site)

    PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x' = dx/dt = f(x,y), y' = dy/dt = g(x,y).

    https://qubeshub.org/resources/pplane