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IONTW
28 Jan 2015 | | Contributor(s):: Drew LaMar
Simulates both discrete and continuous time agent-based models of infectious disease dynamics on networks.
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IPMpack: an R package for Integral Projection Models
19 Jan 2015 | | Contributor(s):: C. Jessica E. Metcalf, Sean M. McMahon, Roberto Salguero-Gómez, Eelke Jongejans, Cory Merow
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/779IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models. An IPM is a demographic tool to explore the...
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Java Applets for Power and Sample Size
10 Mar 2015 | | Contributor(s):: Russell Lenth
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/899From the website:This software is intended to be useful in planning statistical studies. It is not intended to be used for analysis of data that have already been...
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Jupyter Lab
13 Jul 2018 | | Contributor(s):: Erich Huebner
An extensible environment for interactive and reproducible computing, based on the Jupyter Notebook and Architecture.
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Jupyter Notebook
05 May 2017 | | Contributor(s):: Martin Hunt
Starts the Jupyter notebook server in your "notebooks" directory in your home directory.
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Ka-me: Voronoi Image Analyzer 1.0
15 Jun 2015 | | Contributor(s):: John R Jungck
Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern.
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Mesquite
18 Jun 2015 |
A modular system for evolutionary analysis
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Modeling the Mechanisms of Evolution
25 May 2018 | | Contributor(s):: Jackie Matthes
Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.
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NetLogo
23 Jan 2015 |
Multi-agent Programmable Modeling Environment
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OpenRefine
18 Jan 2016 |
OpenRefine (formerly Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.
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Outstanding Oaks: Quercus phenology at NEON sites
22 Jun 2018 | | Contributor(s):: Jackie Matthes
This app visualizes data from the National Ecological Observatory Network (NEON) observations of oak phenology at three different sites.
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Populus: Simulations of Population Biology
09 Jan 2015 | | Contributor(s):: D. N. Alstad
This resource has been updated - find the current version here: https://qubeshub.org/publications/352The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a...
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PPLANE
02 Apr 2015 |
PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x' = dx/dt = f(x,y), y' = dy/dt = g(x,y).
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Predator-prey models as XPP files
12 Nov 2018 | | Contributor(s):: Eli E Goldwyn
These are the .ode files that XPP takes as input. lv.ode is the Lotka-Volterra predator-prey model rm.ode is the Rosenzweig-MacArthur model rm3.ode is the Rosnezweig-MacArthur model but with predation following a Holling Type III functional response. The file rm.ode is...
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QtOctave
19 Feb 2015 |
QtOctave is an open source GUI front-end application for GNU Octave.
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R Commander
04 Sep 2015 | | Contributor(s):: Drew LaMar
R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that is easy and intuitive to use.
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R Shiny App Example
09 May 2018 | | Contributor(s):: Drew LaMar
This is a simple example used to demonstrate what is needed to host your R Shiny app on QUBESHub.
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Radiant
16 Sep 2015 |
Business analytics using R and Shiny.
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Radiant Lite
24 Jul 2019 | | Contributor(s):: Drew LaMar
Stripped down version of Radiant on QUBES
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RStudio IDE for R
22 Jan 2015 |
RStudio is a GUI for R, the statistical programming language.