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Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Because it is modular, the analyses available depend on the modules installed.
Mesquite also has many features for managing and processing data, including processing of chromatograms, sequence alignment, editing of morphometric data, and others.
Cite this work
Researchers should cite this work as follows:
Maddison, W. P. and D. R. Maddison. 2015. Mesquite: a modular system for evolutionary analysis. Version 3.03 http://mesquiteproject.org
College of William and Mary