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Investigating Trade-offs among Mammal Traits
07 Jun 2018 | | Contributor(s):: Jackie Matthes
This app draws on a large species-level dataset with metabolic, life history, and ecological traits of most living and recently extinct mammal species. Users can select and plot traits, fit linear models to the data, and query displayed datapoints.
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IONTW
28 Jan 2015 | | Contributor(s):: Drew LaMar
Simulates both discrete and continuous time agent-based models of infectious disease dynamics on networks.
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IPMpack: an R package for Integral Projection Models
19 Jan 2015 | | Contributor(s):: C. Jessica E. Metcalf, Sean M. McMahon, Roberto Salguero-Gómez, Eelke Jongejans, Cory Merow
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/779IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models. An IPM is a demographic tool to explore the...
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IPMpack: an R package for Integral Projection Models
11 Sep 2018 | Teaching Materials | Contributor(s):
By C. Jessica E. Metcalf1, Sean M. McMahon2, Roberto Salguero-Gómez3, Eelke Jongejans4, Cory Merow5
1. University of Oxford 2. Smithsonian Tropical Research Institute 3. University of Queensland 4. Radbound University Nijmegen 5. STRI and University of Connecticut
IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models.
https://qubeshub.org/publications/779/?v=1
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Java Applets for Power and Sample Size
10 Mar 2015 | | Contributor(s):: Russell Lenth
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/899From the website:This software is intended to be useful in planning statistical studies. It is not intended to be used for analysis of data that have already been...
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Jupyter Lab
13 Jul 2018 | | Contributor(s):: Erich Huebner
An extensible environment for interactive and reproducible computing, based on the Jupyter Notebook and Architecture.
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Jupyter Notebook
05 May 2017 | | Contributor(s):: Martin Hunt
Starts the Jupyter notebook server in your "notebooks" directory in your home directory.
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Ka-me: Voronoi Image Analyzer 1.0
15 Jun 2015 | | Contributor(s):: John R Jungck
Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern.
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Mesquite
18 Jun 2015 |
A modular system for evolutionary analysis
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Modeling the Mechanisms of Evolution
25 May 2018 | | Contributor(s):: Jackie Matthes
Simulate population-level mechanisms of evolution: genetic drift, gene flow, and natural selection.
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NetLogo
23 Jan 2015 |
Multi-agent Programmable Modeling Environment
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OpenRefine
18 Jan 2016 |
OpenRefine (formerly Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.
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Outstanding Oaks: Quercus phenology at NEON sites
22 Jun 2018 | | Contributor(s):: Jackie Matthes
This app visualizes data from the National Ecological Observatory Network (NEON) observations of oak phenology at three different sites.
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Populus: Simulations of Population Biology
09 Jan 2015 | | Contributor(s):: D. N. Alstad
This resource has been updated - find the current version here: https://qubeshub.org/publications/352The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a...
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PPLANE
02 Apr 2015 |
PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x' = dx/dt = f(x,y), y' = dy/dt = g(x,y).
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Predator-prey models as XPP files
12 Nov 2018 | | Contributor(s):: Eli E Goldwyn
These are the .ode files that XPP takes as input. lv.ode is the Lotka-Volterra predator-prey model rm.ode is the Rosenzweig-MacArthur model rm3.ode is the Rosnezweig-MacArthur model but with predation following a Holling Type III functional response. The file rm.ode is...
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QtOctave
19 Feb 2015 |
QtOctave is an open source GUI front-end application for GNU Octave.
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R Commander
04 Sep 2015 | | Contributor(s):: Drew LaMar
R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that is easy and intuitive to use.
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R Shiny App Example
09 May 2018 | | Contributor(s):: Drew LaMar
This is a simple example used to demonstrate what is needed to host your R Shiny app on QUBESHub.
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Radiant
16 Sep 2015 |
Business analytics using R and Shiny.