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Tags: Resources @ QUBES - Software

All Categories (21-40 of 43)

  1. Populus: Simulations of Population Biology

    05 Oct 2015 | | Contributor(s):: D. N. Alstad

    This resource has been updated - find the current version here: https://qubeshub.org/publications/352The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a...

  2. R Commander

    04 Sep 2015 | | Contributor(s):: Drew LaMar

    R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that is easy and intuitive to use.

  3. Augmented Reality Metabolic Pathways (ARMET)

    25 Aug 2015 | | Contributor(s):: Eduardo Galembeck

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/786The New Media Consortium (NMC) Horizon Project defines educational technology in a broad sense as tools and resources that are used to improve teaching, learning, and...

  4. BactVsPhage

    27 Jun 2015 | | Contributor(s):: Drew LaMar

    Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

  5. FastQC

    24 Jun 2015 |

    A quality control tool for high throughput sequence data.

  6. Mesquite

    18 Jun 2015 |

    A modular system for evolutionary analysis

  7. ImageJ

    16 Jun 2015 |

    Image processing and analysis in Java.

  8. Ka-me: Voronoi Image Analyzer 1.0

    15 Jun 2015 | | Contributor(s):: John R Jungck

    Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern.

  9. BioRadiant

    19 May 2015 | | Contributor(s):: Drew LaMar

    Interactive statistics package using R and Shiny.

  10. Statistical Power for One-Sample t-Test

    18 May 2015 | | Contributor(s):: Drew LaMar

    Interactive visualization of statistical power for a one-sample t-test.

  11. PPLANE

    02 Apr 2015 |

    PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x' = dx/dt = f(x,y), y' = dy/dt = g(x,y).

  12. XPPAUT

    31 Mar 2015 |

    XPPAUT is a general numerical tool for simulating, animating, and analyzing dynamical systems.

  13. Java Applets for Power and Sample Size

    10 Mar 2015 | | Contributor(s):: Russell Lenth

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/899From the website:This software is intended to be useful in planning statistical studies.  It is not intended to be used for analysis of data that have already been...

  14. QtOctave

    19 Feb 2015 |

    QtOctave is an open source GUI front-end application for GNU Octave.

  15. IONTW

    28 Jan 2015 | | Contributor(s):: Drew LaMar

    Simulates both discrete and continuous time agent-based models of infectious disease dynamics on networks.

  16. RStudio IDE for R

    22 Jan 2015 |

    RStudio is a GUI for R, the statistical programming language.

  17. COPASI

    10 Feb 2015 |

    COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

  18. NetLogo

    23 Jan 2015 |

    Multi-agent Programmable Modeling Environment

  19. IPMpack: an R package for Integral Projection Models

    19 Jan 2015 | | Contributor(s):: C. Jessica E. Metcalf, Sean M. McMahon, Roberto Salguero-Gómez, Eelke Jongejans, Cory Merow

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/779IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models. An IPM is a demographic tool to explore the...

  20. ABO Blood Group Frequencies

    14 Jan 2015 | | Contributor(s):: John R. Jungck, Jennifer A. Spangenberg

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/756An Excel workbook in which students can calculate blood type frequencies through different approaches (Hardy-Weinberg, quadratic formula, and the EM algorithm).  The...