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18 Jan 2016 |
OpenRefine (formerly Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.
19 Oct 2015 |
DFIELD is an interactive tool that graphs a direction field for a given differential equation.
Populus: Simulations of Population Biology
09 Jan 2015 | | Contributor(s):: D. N. Alstad
This resource has been updated - find the current version here: https://qubeshub.org/publications/352The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a...
04 Sep 2015 | | Contributor(s):: Drew LaMar
R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that is easy and intuitive to use.
Augmented Reality Metabolic Pathways (ARMET)
25 Aug 2015 | | Contributor(s):: Eduardo Galembeck
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/786The New Media Consortium (NMC) Horizon Project defines educational technology in a broad sense as tools and resources that are used to improve teaching, learning, and...
27 Jun 2015 | | Contributor(s):: Drew LaMar
Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.
24 Jun 2015 |
A quality control tool for high throughput sequence data.
18 Jun 2015 |
A modular system for evolutionary analysis
16 Jun 2015 |
Image processing and analysis in Java.
Ka-me: Voronoi Image Analyzer 1.0
15 Jun 2015 | | Contributor(s):: John R Jungck
Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern.
19 May 2015 | | Contributor(s):: Drew LaMar
Interactive statistics package using R and Shiny.
Statistical Power for One-Sample t-Test
18 May 2015 | | Contributor(s):: Drew LaMar
Interactive visualization of statistical power for a one-sample t-test.
02 Apr 2015 |
PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x' = dx/dt = f(x,y), y' = dy/dt = g(x,y).
31 Mar 2015 |
XPPAUT is a general numerical tool for simulating, animating, and analyzing dynamical systems.
Java Applets for Power and Sample Size
10 Mar 2015 | | Contributor(s):: Russell Lenth
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/899From the website:This software is intended to be useful in planning statistical studies. It is not intended to be used for analysis of data that have already been...
19 Feb 2015 |
QtOctave is an open source GUI front-end application for GNU Octave.
28 Jan 2015 | | Contributor(s):: Drew LaMar
Simulates both discrete and continuous time agent-based models of infectious disease dynamics on networks.
RStudio IDE for R
22 Jan 2015 |
RStudio is a GUI for R, the statistical programming language.
10 Feb 2015 |
COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
23 Jan 2015 |
Multi-agent Programmable Modeling Environment