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Genetic Drift Simulation - NetLogo
out of 5 stars
23 Jun 2016 | | Contributor(s):: Tony Weisstein
This model simulates genetic drift in a population. The user can control the population size, whether the population is subdivided into separate local populations, and the amount of gene flow (if any) between local populations. Phenotype frequency in each subpopulation is plotted as a...
15 Oct 2015 |
Wood density shiny app
24 Jan 2016 |
GENI-ACT allows collaborative genome annotation. Researchers or students can collectively suggest changes to an existing genome with supporting evidence. Changes can be ported back to genbank by exporting to a sequin file format. GENI-ACT also has ported the education components from IMG-ACT....
18 Jan 2016 |
OpenRefine (formerly Google Refine) is a powerful tool for working with messy data: cleaning it; transforming it from one format into another; and extending it with web services and external data.
19 Oct 2015 |
DFIELD is an interactive tool that graphs a direction field for a given differential equation.
Populus: Simulations of Population Biology
09 Jan 2015 | | Contributor(s):: D. N. Alstad
This resource has been updated - find the current version here: https://qubeshub.org/publications/352The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a...
04 Sep 2015 | | Contributor(s):: Drew LaMar
R provides a powerful and comprehensive system for analysing data and when used in conjunction with the R-commander (a graphical user interface, commonly known as Rcmdr) it also provides one that is easy and intuitive to use.
Augmented Reality Metabolic Pathways (ARMET)
25 Aug 2015 | | Contributor(s):: Eduardo Galembeck
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/786The New Media Consortium (NMC) Horizon Project defines educational technology in a broad sense as tools and resources that are used to improve teaching, learning, and...
27 Jun 2015 | | Contributor(s):: Drew LaMar
Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.
24 Jun 2015 |
A quality control tool for high throughput sequence data.
18 Jun 2015 |
A modular system for evolutionary analysis
16 Jun 2015 |
Image processing and analysis in Java.
Ka-me: Voronoi Image Analyzer 1.0
15 Jun 2015 | | Contributor(s):: John R Jungck
Ka-me is a Voronoi image analyzer that allows users to analyze any image with a convex polygonal tessellation or any spatial point distribution by fitting Voronoi polygons and their dual, Delaunay triangulations, to the pattern.
19 May 2015 | | Contributor(s):: Drew LaMar
Interactive statistics package using R and Shiny.
Statistical Power for One-Sample t-Test
18 May 2015 | | Contributor(s):: Drew LaMar
Interactive visualization of statistical power for a one-sample t-test.
02 Apr 2015 |
PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x' = dx/dt = f(x,y), y' = dy/dt = g(x,y).
31 Mar 2015 |
XPPAUT is a general numerical tool for simulating, animating, and analyzing dynamical systems.
Java Applets for Power and Sample Size
10 Mar 2015 | | Contributor(s):: Russell Lenth
This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/899From the website:This software is intended to be useful in planning statistical studies. It is not intended to be used for analysis of data that have already been...
19 Feb 2015 |
QtOctave is an open source GUI front-end application for GNU Octave.
28 Jan 2015 | | Contributor(s):: Drew LaMar
Simulates both discrete and continuous time agent-based models of infectious disease dynamics on networks.