Support

Support Options

  • Knowledge Base

    Find information on common questions and issues.

  • Support Messages

    Check on the status of your correspondences with members of the QUBES team.

Contact Us

About you
About the problem

Tags: simulation

All Categories (1-20 of 46)

  1. Anne Elizabeth Yust

    https://qubeshub.org/community/members/8345

  2. Avida-ED

    06 Oct 2017 | | Contributor(s):: Robert T Pennock, Diane Blackwood

         This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/874Avida-ED is an award-winning educational application developed at Michigan State University...

  3. Avida-ED

    25 Oct 2018 | Teaching Materials | Contributor(s):

    By Robert T Pennock1, Diane Blackwood1

    Michigan State University

    Avida-ED is an award-winning educational application developed at Michigan State University for undergraduate biology courses to help students learn about evolution and scientific method.

    https://qubeshub.org/qubesresources/publications/874/?v=1

  4. BactVsPhage

    27 Jun 2015 | | Contributor(s):: Drew LaMar

    Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

  5. CATALST - Change Agents for Teaching and Learning Statistics

    22 Jan 2015 | | Contributor(s):: Joan Garfield, Robert delMas, Andrew Zieffler, Allan Rossman, Beth Chance, John Holcomb, George Cobb

    From the project website: "This project uses the acronym CATALST (Change Agents for Teaching and Learning Statistics) to represent the goal of accelerating change in the teaching and learning of statistics. The changes we are working towards are in both content and pedagogy. Our focus is the...

  6. Chi-Square analysis of two point test cross data

    21 Jan 2015 | | Contributor(s):: Bob Sheehy

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/746This flash tutorial simulates analysis of a 2 point test cross and will walk you through the analysis of two hypothetical traits. Your goal is to determine if these traits...

  7. Chi-Square analysis of two point test cross data

    22 Aug 2018 | Teaching Materials | Contributor(s):

    By Bob Sheehy

    Radford University

    This flash tutorial simulates analysis of a 2 point test cross and will walk you through the analysis of two hypothetical traits.

    https://qubeshub.org/qubesresources/publications/746/?v=1

  8. Computational Biology using R

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Hong Qin

    University of Tennessee Chattanooga

    This is an introductory level course on computational biology.

    https://qubeshub.org/qubesresources/publications/907/?v=1

  9. COPASI

    10 Feb 2015 |

    COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

  10. Course materials for computational genomics using R

    19 Nov 2015 | | Contributor(s):: Hong Qin

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/907The R code and data are deposited at Github: https://github.com/hongqin/RCompBio 

  11. Disease Spread Simulation with M&M's and Information on the wider SIMIODE community

    03 Jul 2015 | | Contributor(s):: Brian Winkel

    This resource has been updated - find the current version here: https://qubeshub.org/publications/358This is a Student Version of a Modeling Scenario from the community, SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations at...

  12. Disease Spread Simulation with M&M's and Information on the wider SIMIODE community

    13 Feb 2018 | Teaching Materials | Contributor(s):

    By Brian Winkel

    SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations

    This is a Student Version of a Modeling Scenario from the community, SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations at www.simiode.org

    https://qubeshub.org/qubesresources/publications/358/?v=1

  13. Erin Kiley

    https://qubeshub.org/community/members/12062

  14. EvolSeq

    14 Sep 2015 | | Contributor(s):: Tony Weisstein, John R Jungck

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/776This worksheet simulates the molecular evolution of DNA sequences. The program begins with a single (random) sequence, then follows that sequence through time as it...

  15. Genetic Drift Simulation - NetLogo

    23 Jun 2016 | | Contributor(s):: Tony Weisstein

    This model simulates genetic drift in a population.  The user can control the population size, whether the population is subdivided into separate local populations, and the amount of gene flow (if any) between local populations.  Phenotype frequency in each subpopulation is plotted as a...

  16. Help! I'm getting a Java error!

    Users may experience a Java error on Mac OS X if they are using Java version 1.3 and below. Please ensure your Java install is up to date.NOTE! For gecko browsers (Mozilla, Firefox, Camino), the...

    https://qubeshub.org/kb/software/javaerr

  17. Lotka-Volterra, the logistic equation, and Isle Royale

    30 Jan 2015 | | Contributor(s):: Stephen Malcolm

    Students work through the basic Lotka-Volterra predator prey model using an example in which the prey exhibit density independence.  Students then incorporate density dependence of prey items using several different features of Populus.

  18. Luria-Delbruck

    14 Sep 2015 | | Contributor(s):: Tony Weisstein, John R Jungck, Doug Green

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/777These two workbooks model the evolution of phage resistance in a bacterial population under two alternative hypotheses. Under the hypothesis of acquired immunity, mutation...

  19. Michaelis-Menten Enzyme Kinetics

    14 Sep 2015 | | Contributor(s):: Tony Weisstein

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/778In this simulation equations used in enzyme kinetics (Michaelis-Menten, Eadie-Hofstee, Dixon, and Lineweaver-Burk) are modeled under various conditions. The equations are...

  20. Modeling the lac Operon to Understand the Regulation of Gene Expression in Prokaryotes

    27 Sep 2019 | Teaching Materials | Contributor(s):

    By Sam S Donovan

    University of Pittsburgh

    This resource is a recitation activity designed for an introductory biology course in which students explore a lac operon simulation (https://qubeshub.org/resources/phetlacoperon).

    https://qubeshub.org/qubesresources/publications/1427/?v=1