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Tags: simulation

All Categories (21-40 of 46)

  1. Genetic Drift Simulation - NetLogo

    23 Jun 2016 | | Contributor(s):: Tony Weisstein

    This model simulates genetic drift in a population.  The user can control the population size, whether the population is subdivided into separate local populations, and the amount of gene flow (if any) between local populations.  Phenotype frequency in each subpopulation is plotted as a...

  2. Modeling: A Primer - The crafty art of making, exploring, extending, transforming, tweaking, bending, disassembling, questioning, and breaking models

    26 Feb 2016 | | Contributor(s):: William Wimsatt, Jeff Schank

    This resource has been updated - find the current version here: https://qubeshub.org/publications/346Explore how to use, analyze, and criticize some important and historically influential models in biology in this text only module.

  3. Feb 01 2016

    Teaching quantitative biology with agent-based models and NetLogo

    This faculty mentoring network will provide participants with a basic introduction to teaching agent-based modeling with NetLogo. The goal is to increase faculty awareness of how NetLogo-based...

    https://qubeshub.org/news/events/details/577

  4. Course materials for computational genomics using R

    19 Nov 2015 | | Contributor(s):: Hong Qin

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/907The R code and data are deposited at Github: https://github.com/hongqin/RCompBio 

  5. SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations

    20 Oct 2015 | | Contributor(s):: Brian Winkel

    SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations  is about teaching differential equations using modeling and technology upfront and throughout the learning process. You can learn more at our dynamic website, www.simiode.org, where we...

  6. Populus: Simulations of Population Biology

    05 Oct 2015 | | Contributor(s):: D. N. Alstad

    This resource has been updated - find the current version here: https://qubeshub.org/publications/352The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota. Simulation models may be chosen from a...

  7. EvolSeq

    14 Sep 2015 | | Contributor(s):: Tony Weisstein, John R Jungck

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/776This worksheet simulates the molecular evolution of DNA sequences. The program begins with a single (random) sequence, then follows that sequence through time as it...

  8. Luria-Delbruck

    14 Sep 2015 | | Contributor(s):: Tony Weisstein, John R Jungck, Doug Green

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/777These two workbooks model the evolution of phage resistance in a bacterial population under two alternative hypotheses. Under the hypothesis of acquired immunity, mutation...

  9. Michaelis-Menten Enzyme Kinetics

    14 Sep 2015 | | Contributor(s):: Tony Weisstein

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/778In this simulation equations used in enzyme kinetics (Michaelis-Menten, Eadie-Hofstee, Dixon, and Lineweaver-Burk) are modeled under various conditions. The equations are...

  10. Disease Spread Simulation with M&M's and Information on the wider SIMIODE community

    03 Jul 2015 | | Contributor(s):: Brian Winkel

    This resource has been updated - find the current version here: https://qubeshub.org/publications/358This is a Student Version of a Modeling Scenario from the community, SIMIODE - Systemic Initiative for Modeling Investigations and Opportunities with Differential Equations at...

  11. BactVsPhage

    27 Jun 2015 | | Contributor(s):: Drew LaMar

    Simulates basic models in theoretical ecology, as well as three models of bacteria/bacteriophage interactions.

  12. ModelSim Population Biology Unit

    18 May 2015 |

    This resource has been updated - find the current version here: https://qubeshub.org/qubesresources/publications/902This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology....

  13. Population genetics simulation program

    Collections | 14 Apr 2015 | Posted by Alison N Hale

    https://qubeshub.org/community/groups/populus/collections/other-resources-shared-by-participants

  14. PPLANE

    02 Apr 2015 |

    PPLANE is a tool for Phase Plane Analysis of a System of Differential Equations of the form: x' = dx/dt = f(x,y), y' = dy/dt = g(x,y).

  15. QtOctave

    19 Feb 2015 |

    QtOctave is an open source GUI front-end application for GNU Octave.

  16. POPULUS Lotka - Volterra, the logistic equation & Isle Royale

    13 Feb 2015 | | Contributor(s):: Stephen Malcolm

    Laboratory exercise explores predator-prey dynamics using Populus.

  17. POPULUS Simulations of interspecific competition using the Lotka-Volterra model

    13 Feb 2015 | | Contributor(s):: Scott Creel

    Explores the Lotka-Volterra model of interspecific competition using Populus.  

  18. COPASI

    10 Feb 2015 |

    COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

  19. Help! I'm getting a Java error!

    Users may experience a Java error on Mac OS X if they are using Java version 1.3 and below. Please ensure your Java install is up to date.NOTE! For gecko browsers (Mozilla, Firefox, Camino), the...

    https://qubeshub.org/kb/software/javaerr

  20. POPULUS Evolutionary forces

    02 Feb 2015 | | Contributor(s):: Jonathan M. Brown

    This lab is focused on understanding how evolutionary forces - including mutation, genetic drift, migration, and selection - result in changes in population allele frequencies.