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Tags: Software

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  1. Software suggestion for sequence data: MEGA

    Check out this intro-level, user-friendly GUI application MEGA: Molecular Evolutionary Genetics Analysis. https://www.megasoftware.net/

    https://qubeshub.org/community/projects/ecosystemdiversit/notes/Softwaresuggestionforsequencedata:MEGA

  2. Rebecca Gasper

    https://qubeshub.org/community/members/11769

  3. David Shaner LeBauer

    https://qubeshub.org/community/members/10773

  4. Preston Haugh

    Hi all,I am an Sophomore at Bates College majoring in Economics with applied interest in our new Digital and Computational Studies discipline. I am a member of the varsity golf team and enjoy...

    https://qubeshub.org/community/members/10355

  5. Using computational molecular modeling software to demonstrate how DNA mutations cause phenotypes

    04 Jan 2019 | Teaching Materials | Contributor(s):

    By Tara Phelps-Durr

    Radford University

    This lesson is a five-week series of laboratory activities designed to help students transition from applying lower order thinking skills to the central dogma to applying higher-order thinking skills.

    https://qubeshub.org/qubesresources/publications/1006/?v=1

  6. Fitzhugh-Nagumo Model

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Richard FitzHugh1, Jin-ichi Nagumo2

    1. Technische Hochschule 2. University of Tokyo

    The FitzHugh–Nagumo model describes a prototype of an excitable system (e.g., a neuron).

    https://qubeshub.org/qubesresources/publications/903/?v=1

  7. ModelSim Population Biology Unit

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Uri Wilensky1, Paulo Blikstein2, Corey Brady3, David Figlio1, Pratim Sengupta4, Jason Bertsche1, Yu (Bryan) Guo1, Nathan Holbert1, Michael Novak1, Firat Soylu1, Aditi Wagh1, Gokul Krishnan4, Brogan Miller2, Shima Salehi2

    1. Northwestern University 2. Stanford University 3. Inquire Learning 4. Vanderbilt University

    This resource provides rich student modeling activities and materials, teacher resources, and much more, in the realm of agent based models applied to population biology.

    https://qubeshub.org/qubesresources/publications/902/?v=1

  8. Java Applets for Power and Sample Size

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Russ Lenth

    Statistics and Actuarial Science Department, University of Iowa

    This is a Java application that allows you to do power and sample-size calculations for a number of standard statistical models.

    https://qubeshub.org/qubesresources/publications/899/?v=1

  9. Tools: New tools for new science

    30 Oct 2018 | Teaching Materials | Contributor(s):

    By Harry Shum

    Microsoft

    A collection of computational, modeling and data analysis tools developed at Microsoft Research Labs.

    https://qubeshub.org/qubesresources/publications/891/?v=1

  10. Avida-ED

    25 Oct 2018 | Teaching Materials | Contributor(s):

    By Robert T Pennock1, Diane Blackwood1

    Michigan State University

    Avida-ED is an award-winning educational application developed at Michigan State University for undergraduate biology courses to help students learn about evolution and scientific method.

    https://qubeshub.org/qubesresources/publications/874/?v=1

  11. Web Popgen

    23 Oct 2018 | Teaching Materials | Contributor(s):

    By Bob Sheehy

    Radford University

    A Hardy-Weinberg simulation program.

    https://qubeshub.org/qubesresources/publications/842/?v=1

  12. Sample NetLogo Code of Bacterial Growth

    01 Oct 2018 | Teaching Materials | Contributor(s):

    By Anne Elizabeth Yust

    The New School

    Each NetLogo file is a sequential version of the final bacterial growth model produced in the Bacterial Growth Tutorial. These are to be used as checks to one's understanding alongside the tutorial.

    https://qubeshub.org/qubesresources/publications/800/?v=1

  13. Augmented Reality Metabolic Pathways (ARMET)

    12 Sep 2018 | Teaching Materials | Contributor(s):

    By Eduardo Galembeck

    University of Campinas (Brazil)

    The ARMET app is developed using Unity, 3D molecules obtained from Protein Data Bank and ChemSpider-chemical structure database, the usage data are stored into a database (MySQL) and are analyzed...

    https://qubeshub.org/qubesresources/publications/786/?v=1

  14. Cookbook for R

    11 Sep 2018 | Teaching Materials | Contributor(s):

    By Winston Chang

    The goal of the cookbook is to provide solutions to common tasks and problems in analyzing data.

    https://qubeshub.org/qubesresources/publications/780/?v=1

  15. IPMpack: an R package for Integral Projection Models

    11 Sep 2018 | Teaching Materials | Contributor(s):

    By C. Jessica E. Metcalf1, Sean M. McMahon2, Roberto Salguero-Gómez3, Eelke Jongejans4, Cory Merow5

    1. University of Oxford 2. Smithsonian Tropical Research Institute 3. University of Queensland 4. Radbound University Nijmegen 5. STRI and University of Connecticut

    IPMpack is an R package (R Development Core Team 2013) that allows users to build and analyse Integral Projection Models.

    https://qubeshub.org/qubesresources/publications/779/?v=1

  16. Cell Collective

    21 Jun 2018 | Teaching Materials | Contributor(s):

    By Nick Galt1, Tomas Helikar2

    1. Valley City State University and University of Nebraska-Lincoln 2. University of Nebraska-Lincoln

    Session presentation on an easy-to-use software, that makes this computational modeling approach accessible to any student and instructor

    https://qubeshub.org/qubesresources/publications/673/?v=1

  17. Software Carpentry

    Collections | 13 Jun 2018 | Posted by Carlos Christopher Goller

    https://qubeshub.org/community/groups/hits/collections/learning-tools-how-to-use-analysis-tools

  18. Populus: Simulations of Population Biology

    08 Feb 2018 | Teaching Materials | Contributor(s):

    By D. N. Alstad

    University of Minnesota

    Link to Populus Software

    https://qubeshub.org/qubesresources/publications/352/?v=1

  19. 4th Avida-ED Active LENS Workshop: Summer 2018

    06 Feb 2018 | Posted by QUBES Team

    The 4th annual Avida-ED Active LENS Workshops will be held this summer. This year, we are offering two options: one, at the North Carolina A&T University in Greensboro, North Carolina,...

    https://qubeshub.org/news/blog/2018/02/4th-avida-ed-active-lens-workshop-summer-2018

  20. Prepare your computer

    Collections | 21 Jul 2017 | Posted by Shuchismita Dutta

    https://qubeshub.org/community/members/5730/collections/3d-modeling-using-the-protein-data-bank

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